Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4819g00001 ATGGAAGAAACAACCGAGATGCAATCAGAAGAAAATAAATTGTCAATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCTGCGCAGCTTACAGCATTGGAAAGTTTTTATAATGATCACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCTGAAGAGTTAGAATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAGTTGTTGAATGATGAAGTAGGTGCCAATGGACGACAAGATCGTTCAAGTGGTGTTATCCAGGACAGAGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGATATGACCTATGCACACAGAAACCATCATTATGCAGAAAATGATAGTGCAACTGATAACACGTCATCTGAGAGTTGCTCATCTTTGCAAGATCGATTGCTTCCTCAAGGACAGGATCAATATGACATGGAGCCTTCTAGTCATTTGATGCCTAATGGGTCTCTTCCGCCGCTAAATCCTAAGGGTGCAAATAACATGGGGTATAAACCATCAGGGTATTTAAAAGTGAAGGGAGAGATAGAACATGTTGCTATTACTGCTGTCAAAAAGCAATTAGGAAATCATTTTCAGGAAGATGGACCATTACTTAGTGTTGAATTTGATACAATTCCTCCAGGAGCATTTGAAGGACAAATTGCAGATCTAGCTAATGAAGGGTACTATGCTGCAAATCCTGCTCTTCCAAATTCACCAGAAGTCTCTGCTGGGAAAAAGCAATCCAGTAGCTCAAGATATGATTCATATTTTACCAAATTAAGGTCCCAAGATTCACATATGGTTGGAGGTGACTTTGGCTCTTTGCATGGTCCTGATTTCCAGGATAAGAAACCCCACAAGCAGATAAATCAAAGAGCAAGTTTTCACAGTTTTACCAATCATTTGCCTCACAAGAACTCTTCCCTGGATTTGTATGTAGACTCTACTGGGGAAGCATCTGCTTATAATGGTGGTAAAAACCATAGGATGGGTACTAAGCATGGTTTTGAGGGGATGAGGTCAGACTCGGCTTCCTACCCCAGTGACCACTATGAAGAAAATGCCGTTGCAGTTAAGCAGATAGATTCGCTGTTAGATCTCTACAATAACATCAATCTGAAGAATGTACAAAAGAATGAATATGTAAAATCTAAGCCTTCAAATTCAATACATAAGTCTCAAATTTACTTGAATGCTGAAGAAAAAGGGCTTACAAAAAGGATGGCCAAGGAAGAGAAGTTTAATGACGAGAGAAAGTTAAGAAAACAATATCATGTTCCAGATGGAATTAGGGTGCTTTCAAATGAAAAAATGGTTGCAAAGCGAGCTAAAGTTGACCCATTTGAATCATATGATGTTAAACAAACACCTCTTTCTGACCTGGAACCAAGAAAAGTTCAAAGGTCTGCAGCAGAGATGCCATCTAGATTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCGGTGGATTAA 1503 0.3925 MEETTEMQSEENKLSMEKNKKRRLKTPAQLTALESFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKKLLNDEVGANGRQDRSSGVIQDRGSGLVQDSCGSTKHDMTYAHRNHHYAENDSATDNTSSESCSSLQDRLLPQGQDQYDMEPSSHLMPNGSLPPLNPKGANNMGYKPSGYLKVKGEIEHVAITAVKKQLGNHFQEDGPLLSVEFDTIPPGAFEGQIADLANEGYYAANPALPNSPEVSAGKKQSSSSRYDSYFTKLRSQDSHMVGGDFGSLHGPDFQDKKPHKQINQRASFHSFTNHLPHKNSSLDLYVDSTGEASAYNGGKNHRMGTKHGFEGMRSDSASYPSDHYEENAVAVKQIDSLLDLYNNINLKNVQKNEYVKSKPSNSIHKSQIYLNAEEKGLTKRMAKEEKFNDERKLRKQYHVPDGIRVLSNEKMVAKRAKVDPFESYDVKQTPLSDLEPRKVQRSAAEMPSRFSEDETAETSSSVD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4819g00001 500 SMART HOX_1 18 80 IPR001356 GO:0003677
Vium4819g00001 500 MobiDBLite consensus disorder prediction 84 107 - -
Vium4819g00001 500 MobiDBLite consensus disorder prediction 1 27 - -
Vium4819g00001 500 MobiDBLite consensus disorder prediction 7 24 - -
Vium4819g00001 500 MobiDBLite consensus disorder prediction 468 489 - -
Vium4819g00001 500 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Vium4819g00001 500 MobiDBLite consensus disorder prediction 461 500 - -
Vium4819g00001 500 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 500 - -
Vium4819g00001 500 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Vium4819g00001 500 Gene3D - 8 91 - -
Vium4819g00001 500 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vium4819g00001 500 MobiDBLite consensus disorder prediction 82 107 - -
Vium4819g00001 500 CDD homeodomain 20 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4819g00001 Vium-Chr4819 1643 7117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4819g00001 3 500 Homeobox Transcription Factor Family AT4G03250 37.618 2.57e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium4819g00001 Homeodomain 6.7e-17 CL0123