Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4815g00002 ATGTTGTCACTTTCATTGCCCCTTTCCCACATACACTTTTCCAACGATGTTCTCCTCCAACCCGTTTTCCTTCACGGCTTGTCCGGCTTCCTCCACCTTCTGTTGCTCGTCGCGGTTCCATTGTCGTTTGTTTGGAAGAAATTCACGACACGTGTCAGGGATGAGTCTAAGGAGAAGCACGAGAACACCCTCTTCAAAACGACTGTGTTTTGTGCTCTCGGTGTTTCTGTTTTCAATTTTCTCCTCTGTTTGTTCAATTACTTCTATTGGTACTCTAGCGGCTGGTCTGAAGAGAAGCTCGTGACCCTTTTGGATTTGGTGCTTAAAACAGTTGCGTGGGGAGTTGTTTGTGTTTGCTTGCACAACGGGTTCTTCAGTTCTGGCGAAAGAATGTTCTCATTCCTCTTCAGAGCTTGGTGCGTCTTGTACCTCTTTGTTTCTTGCTACTGCTCTGTGGTGGACATTGTTGTTATATCAGAGAGACGCGTTGCTTTTCCAGCTCAGTACTTGGTTTCTGATGTGGTTTCCACTTGTTTTGGTCTGTTATTCTGTTACGTCGGGTATTTTGTGAAAAACAAAGGCCTGGTTCGAGAAAAAGAAAATAAAGGTATTCAGGAACCACTTTTGAATGGTGGCACAAATGACGCTGATGTCTTGAGATCGAATGAGACCAAGGGTGGAGACACCGTTACCCCTTTCTCATATGCTGGCATTTTGAGCCTTCTTACATTCTCTTGGATGGGTCCTCTTATAGCTGTTGGCAATAAGAAGGCCCTGGACCTTGAGGATGTTCCTCAACTAGACAGCACAGACAGTATTGTTGGTGCTTTTCCAAGTTTCAGAGATAATCTTGAGGCTAATTGTGGCACAATAAATAATGTCACCACACTTAAGTTGGTGAAGGCGTTAGTGATGTCAGCGTGGAAGGAGATTCTTTTCACAGGTTTTCTTGTAACAACAAACACTTTGGCTTCTTATGTTGGTCCTTATCTTATTGACAGTTTTGTTCAGTATCTTGATAGACGACGGCTATATGAAAACCAGGGCTATGTTTTGGTTTGTTCCTTTTTCTTTGCTAAGATTGTAGAGTCTCTGTCCCAAAGGCATTGGTTCTTTAGGTTGCAGCAAATTGGAATTCGAATTCGTGCACTGCTTGTCACAATGATCTATAACAAGGCTCTGACTCTTTCTTGTCAGTCAAAGCAGGGTCAGACATCTGGAGAAATAATCAATATCATGACCGTTGATGCTGAAAGAGTTGGTGTCTTCAGTTGGTATATGCATGATTTGTGGATGGTGGCTTTGCAAGTTACTTTGGCCTTGTTGATTTTGTATAAAAATCTTGGGCTGGCTTCACTTGCTGCTTTTGCTGCAACTATCGTTATTATGCTTGCAAATGTTCCCTTGGGATCATTGCAAGAGAAATTTCAGAAGAAGTTGATGGAGTTGAAAGATACAAGAATGAAGGCCACGTCCGAGATTTTAAGGAATATGAAGATTCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCAAAAATAACTGAGCTCAGGAAAACTGAGCAGGGCTGGTTAAAAAAGTTTGTCTATACTGCAGCCATGACCACCTTTGTGTTTTGAGGTGCCCCCACATTTGTAGCCGTGGTTACTTTTGGTACTTGTATGATTGTAGGGATTCCCCTCGAGTCAGGGAAGATATTGTCTGCACTAGCGACATTCCGGATTCTTCAAGAGCCCATTTATAACCTTCCAGATACCATTTCGATGATAGCACAAACTAAAGTGTCTCTTGATAGGATTGCATCATTCCTTCGTCTGGATGACTTACCCTCTGATGTTGTAGAGAAGCTTCCCCCGGGTAGTTCTGATACAGCAATTGAAGTAGTTGATGGAAACTTTTCTTGGGAGTTATCTTCCCCCAACCCAACATTGCAAGATATAAACCTTAAAGTTTTTCATGGGATGAGGGTTGCAGTTTGTGGTACTGTTGGATCAGGCAAATCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCTAAGATATCAGGCATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCTCCATGGATACAAAGTGGCAAGATTGAGGATAATATATTGTTTGGTAAACAAATGGATAGGGAAAAGTACGAGAAGGTACTTGAAGCGTGTTCCCTGAAGAAGGATCTGGAGATTTTGTCGTTTGGTGATCAGACAATCATTGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATTGCACGTGCACTTTACCAAGATGCTGATATATATCTACTTGATGATCCTTTTAGTGCAGTGGATGCTCACACGGGCTCTCACCTCTTTAAGGAGTGCTTGTTGGGCCTTTTACGTTCAAAGACAGTGATTTATGTCACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTTATATTGGTCATGAAAAACGGGAAAATTACTCAATGTGGAAAGTATACTGATCTGCTTGATAGTGGAGCTGATTTTATGGAACTTGTTGGTGCACACAAAAAAGCTTTGTCTACTCTAGATTCATTAGATGGAGCAACAGTATCTAATGAAATAAGCACCTTGGAACAAGATTTAGATGCCTCTGAAATGCATGGATATAAAGAAGAGGCAAGCAAAAATGAACAAAATGGTGAAACAGACAACAAAAGTGATGAACCTAAAGGCCAACTTGTTCAGGAAGAAGAAAGGGAGAAAGGTAAAGTTGAGTTTTCAGTATACTGGAAATGTATCACGACAGCATATGGAGGAGCTCTTGTGCCATTCATATTATTGGCTCAGATTCTTTTTCAAGGTCTTCAAATCGGAAGCAATTATTGGATGGCTTGGGCGACTCCCATCTCAACAGATGTTGAGCCACCTGTTGATGGAACAACTCTTATTGCGGTTTATGTTAGTTTGACCATTGGAAGTTCTTTCTGCATCCTTGCCAGGGCAATGCTTCTTGTTACAGCTGGTTATAAGACAGCTACTATTCTCTTCAACAAAATGCACTATTGTATTTTCCGTGCTCCAATGTCATTTTTCGATTCCACTCCAAGTGGACGAATCCTTAATAGAGCTTCTACAGATCAGAGTGCATTGGATACAGACATTCCTTATCAAATTGCATCATTTGCCTTCATTATGATCCAACTTTTGGGAATTATAGCAGTGATGTCCCAGGCTGCATGGCAAGTTTTCCTTGTCTTTATTCCTGTAATCACAGTCAGCATCTGGTATCAGCAATATTATATTCCATCAGCTCGAGAACTAGCACGTTTAGTTGGAGTCTGCAAAGCACCAATAATTCAACACTTTTCTGAAACAATTTCTGGAACTTCAACCATTAGAAGCTTTGATCAGCAGTCGAGATTTCAGGAAACAAATATGAAACTGAGTGATGGGTATTCTCGGCCAAAGTTCAACATTGCTGGTGCCATGGAATGGTTGTGCTTCCGCTTAGACATGTTGTCTCTTATCACTTTTGTCTTTTCCTTAATATTCTTAATATCTATTCCAGTGGGATTCATAGATCCAGGCCTTGCTGGTTTAGCTGTTACGTATGGACTAAATTTGAACGAGATACAAGCTTGGATGATATGGAATCTCTGCAATATGGAGAATAAAATTATATCAGTGGAAAGAATACTTCAGTACACATGTATTCCTAGTGAGCCTCCCCTTGTAATAGATGAAAATCGCCCAGATACTTCCTGGCCCTCAAATGGAGAGGTTGATATACAAGATTTGAAGGTTCGCTATGCTCCACATCTTCCACTTGTGTTGTGTGGCCTTACGTGCAAATTTCATGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACTCTCATACAAACGCTTTTCCGAGTTGTTGACCCTGCTGCAGGGCAAATTATGATCGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCTACAATGTTTGAAGGGACAATAAGAAATAATCTGGACCCCCTTGAAGAATACACTGATGATCAAATTTGGGAGGCCTTGGATAAATGTCAACTTGGAGACGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCCAAAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGACAGTTGGTCTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTGCATCAGTCGACACAGCTACGGATAATTTGATTCAGCAAACTCTCAGGCAACATTTCGCTGACTCCACAGTTATTACCATTGCACACCGAATAACTTCAGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCCACAAGGTTGCTAGAGAACAAGTCATCATCTTTTGCTCAGCTTGTTGCTGAGTATACCATGAGGTCCAAGTCCAGTTTTGAGAAATCCGATGATCACTGA 4521 0.4132 MLSLSLPLSHIHFSNDVLLQPVFLHGLSGFLHLLLLVAVPLSFVWKKFTTRVRDESKEKHENTLFKTTVFCALGVSVFNFLLCLFNYFYWYSSGWSEEKLVTLLDLVLKTVAWGVVCVCLHNGFFSSGERMFSFLFRAWCVLYLFVSCYCSVVDIVVISERRVAFPAQYLVSDVVSTCFGLLFCYVGYFVKNKGLVREKENKGIQEPLLNGGTNDADVLRSNETKGGDTVTPFSYAGILSLLTFSWMGPLIAVGNKKALDLEDVPQLDSTDSIVGAFPSFRDNLEANCGTINNVTTLKLVKALVMSAWKEILFTGFLVTTNTLASYVGPYLIDSFVQYLDRRRLYENQGYVLVCSFFFAKIVESLSQRHWFFRLQQIGIRIRALLVTMIYNKALTLSCQSKQGQTSGEIINIMTVDAERVGVFSWYMHDLWMVALQVTLALLILYKNLGLASLAAFAATIVIMLANVPLGSLQEKFQKKLMELKDTRMKATSEILRNMKILKLQGWEMKFLSKITELRKTEQGWLKKFVYTAAMTTFVFXGAPTFVAVVTFGTCMIVGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLPSDVVEKLPPGSSDTAIEVVDGNFSWELSSPNPTLQDINLKVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGKQMDREKYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLRSKTVIYVTHQVEFLPAADLILVMKNGKITQCGKYTDLLDSGADFMELVGAHKKALSTLDSLDGATVSNEISTLEQDLDASEMHGYKEEASKNEQNGETDNKSDEPKGQLVQEEEREKGKVEFSVYWKCITTAYGGALVPFILLAQILFQGLQIGSNYWMAWATPISTDVEPPVDGTTLIAVYVSLTIGSSFCILARAMLLVTAGYKTATILFNKMHYCIFRAPMSFFDSTPSGRILNRASTDQSALDTDIPYQIASFAFIMIQLLGIIAVMSQAAWQVFLVFIPVITVSIWYQQYYIPSARELARLVGVCKAPIIQHFSETISGTSTIRSFDQQSRFQETNMKLSDGYSRPKFNIAGAMEWLCFRLDMLSLITFVFSLIFLISIPVGFIDPGLAGLAVTYGLNLNEIQAWMIWNLCNMENKIISVERILQYTCIPSEPPLVIDENRPDTSWPSNGEVDIQDLKVRYAPHLPLVLCGLTCKFHGGLKTGIVGRTGSGKSTLIQTLFRVVDPAAGQIMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTIRNNLDPLEEYTDDQIWEALDKCQLGDEVRKKEGKLDSKVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFADSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTRLLENKSSSFAQLVAEYTMRSKSSFEKSDDH 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4815g00002 1506 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Vium4815g00002 1506 CDD ABCC_MRP_domain1 626 826 - -
Vium4815g00002 1506 MobiDBLite consensus disorder prediction 880 912 - -
Vium4815g00002 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524
Vium4815g00002 1506 Pfam ABC transporter 1276 1421 IPR003439 GO:0005524
Vium4815g00002 1506 CDD ABCC_MRP_domain2 1254 1474 - -
Vium4815g00002 1506 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Vium4815g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 291 608 IPR036640 GO:0005524|GO:0016020
Vium4815g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 899 1237 IPR036640 GO:0005524|GO:0016020
Vium4815g00002 1506 Pfam ABC transporter transmembrane region 314 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4815g00002 1506 Pfam ABC transporter transmembrane region 939 1180 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4815g00002 1506 FunFam ABC transporter C family member 10 295 608 - -
Vium4815g00002 1506 SMART AAA_5 1282 1474 IPR003593 GO:0016887
Vium4815g00002 1506 SMART AAA_5 653 826 IPR003593 GO:0016887
Vium4815g00002 1506 CDD ABC_6TM_ABCC_D2 937 1231 IPR044726 GO:0140359
Vium4815g00002 1506 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Vium4815g00002 1506 FunFam ABC transporter C family member 3 1239 1491 - -
Vium4815g00002 1506 Gene3D - 614 864 IPR027417 -
Vium4815g00002 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1247 1487 IPR027417 -
Vium4815g00002 1506 FunFam ABC transporter C family member 5 900 1237 - -
Vium4815g00002 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 592 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4815g00002 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium4815g00002 1506 Coils Coil 473 493 - -
Vium4815g00002 1506 Gene3D - 1239 1492 IPR027417 -
Vium4815g00002 1506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 234 1493 - -
Vium4815g00002 1506 SUPERFAMILY ABC transporter transmembrane region 938 1238 IPR036640 GO:0005524|GO:0016020
Vium4815g00002 1506 FunFam ABC transporter C family member 5 611 858 - -
Vium4815g00002 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 848 IPR027417 -
Vium4815g00002 1506 SUPERFAMILY ABC transporter transmembrane region 304 612 IPR036640 GO:0005524|GO:0016020
Vium4815g00002 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1256 1490 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4815g00002 Vium-Chr4815 9895 16558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4815g00002 626 856 Calmodulin-binding Proteins AT2G36910 30.315 5.77e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4815g00002 - K05666 gmx:100777836 2563.87