Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00034 ATGCACCCCATGGAAAATGTCTTCTCTCTTCCTGTAGCCGCCAGGGCTGATTTTATGCAATTTCTGTTGCAGTCTTTTGGCTGCAGTTACATCTGTCTGTGGGCATATGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACGACCAACCGGGCTCTAGTTTGGGGACTGTGGCACAACAACTTTTCAGACAGTTCAGGACTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTGAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCGAGGATTAAGAGTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGCAGAATTTTCCACGGGACAGTCCCAGCAAATTGATCAAAACCCTCCCACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTCCCTGAGACACTTGGAGGAGCAAGAGTGTCCCCAATGCAGCCAGTGCCAAACACAGCCACTGGTTCTCACCAACAAGCCATTCAAGCACTGGCACAAGCCCCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAAAGCAATCCTCCATGTTATATCTCCAACTTCTCATCAGCACCAAAACTTGCCCTTTGATCCAGTGGTTCATCCAGATGCCAGTGCTTTCCAGAGGTACAGATCAGACATTGGTCCTAATATAGCTTCCAATATCAGAAAGCAAAGCTTCATGAAGCGATCTTTTGCATTCTTTAGAAACTTAAACTTTATGAGAATGAGAGAACGCATTCAAGCAACGTCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCATTACTTCCTCCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTATCTAATGGCTGAAGTTGATCAACTAAGCAAAAGGAATCAGGGTTTGAAATCACTTTTGCCATCCAAAGAACCTACAACTGAAGAAACCAAGGCTAGATTATCTCCAAATGAAAGATTAAGTGTCCGAGTTTCACATGTACCCGAATCAAGCTCGTCACAGGAGCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAACTTTCTCAAATTGATCTGTCAATCTGCTTATTGGAATTCCTAAAACAGTGTCTCAACATGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGAAATAATGAAATTCATCAACTAACCTTCAGATTAAGGATTATTCAGGGAAGTGATTGGGACGAGTGTACCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTACAAAGAGGACTAA 1563 0.4312 MHPMENVFSLPVAARADFMQFLLQSFGCSYICLWAYDSISPNRLCFLDGIYNVRNDQPGSSLGTVAQQLFRQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKSAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPAEFSTGQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVSPMQPVPNTATGSHQQAIQALAQAPLTQFPTPETEHDAIMKAILHVISPTSHQHQNLPFDPVVHPDASAFQRYRSDIGPNIASNIRKQSFMKRSFAFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSYLMAEVDQLSKRNQGLKSLLPSKEPTTEETKARLSPNERLSVRVSHVPESSSSQERMVDLQVNVRGQLSQIDLSICLLEFLKQCLNMSLVSMDANTHIAEGNNEIHQLTFRLRIIQGSDWDECTFEEAVRRVVADLAQYKED 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00034 520 CDD bHLH_AtbHLH_like 336 388 IPR045239 -
Vium4807g00034 520 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 513 IPR044658 -
Vium4807g00034 520 MobiDBLite consensus disorder prediction 394 416 - -
Vium4807g00034 520 MobiDBLite consensus disorder prediction 161 184 - -
Vium4807g00034 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Vium4807g00034 520 Coils Coil 337 357 - -
Vium4807g00034 520 Gene3D - 330 404 IPR036638 GO:0046983
Vium4807g00034 520 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Vium4807g00034 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 396 IPR036638 GO:0046983
Vium4807g00034 520 SMART finulus 337 386 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00034 Vium-Chr4807 225894 230149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00034 15 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.262 1.70e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4807g00034 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00034 - - gmx:100807098 803.897