Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00027 ATGGATGTTTCCGAGTGCGAGTCCCTTCAGAAAGTGAAAGCAAAGGAACCAAACAAGGTTGGTTCTGAAAACGGCATCGTTTTGATGAAGGAAGAAGATGTTGAGTGGGGTCCACAACCGTTCATGAAGAAGATATTGAAAATGGTGGAAGATGAGAGCTCGAACCCAATTGTATCGTGGGGTGAAGGGCGTTGTAGTTTCGTGATTTGGGATTCTGCTAAGTTCAGTAAAACCATTCTTCCAAACTACTTCAAGCACAGTAACTTCTCTAGCTTCCTTCGCCAACTTAACAACTATGGGTTTAAGAAGGTTAATCCAAAGCGTTGGGAGTTTGCATGTGAAGGTTTTCAACCAGGAAAAAGGCATTTACTGAAGCATATCGTGAGAAGAGGAAGAAAGAATAAGTTGTGTAATGAACAACTTCGAGGTGAAGTTGAGGAGCTGAAGAAGGAGAAGAACGTGTTAGCACTGGAAATTCTAAAGCTCACACAACGGCTTAGGGATTCACAGGTTCAACTTAACAATTTTGAAGAACGGCTTCGGTATGTTGAGTTGAAGCAATATCAGATGTTGGATTTCTTCAGCAGAATGGTCCAAGTGCCTGGTTTTGTTGAGCAATTGGTTCACAAGATTCAGCAGAAAGATGGGGTTGATGGGGCAGACATGGTTATGAGATGCAAATTTTTGGGACCTCAGTACTATTTGAGCTTCTCTAATAAGGGCACTAACACTAGCTCAAACTTTGGTTATTATAGACAGCAAGGTTTTGAACAAAATGGTATCACCAGCTTCTGTCCTGTGAAAGATGATTCATACATATCTACACAAGGGCCGAGGACTGATGGTTATGATGTGTCACATGCTTATGATGGTGTGTTAGAAGAATTACTAAGTGAGAATTTTGGTGAGGATGTAAATGTAAGTGTGAATGAGTCAAATATATATCTTGAGTTGGAGAGTTTGATTGGATCCACAAGTGGATTGATGGGGTGA 993 0.4099 MDVSECESLQKVKAKEPNKVGSENGIVLMKEEDVEWGPQPFMKKILKMVEDESSNPIVSWGEGRCSFVIWDSAKFSKTILPNYFKHSNFSSFLRQLNNYGFKKVNPKRWEFACEGFQPGKRHLLKHIVRRGRKNKLCNEQLRGEVEELKKEKNVLALEILKLTQRLRDSQVQLNNFEERLRYVELKQYQMLDFFSRMVQVPGFVEQLVHKIQQKDGVDGADMVMRCKFLGPQYYLSFSNKGTNTSSNFGYYRQQGFEQNGITSFCPVKDDSYISTQGPRTDGYDVSHAYDGVLEELLSENFGEDVNVSVNESNIYLELESLIGSTSGLMG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00027 330 FunFam Heat stress transcription factor B-4 34 131 - -
Vium4807g00027 330 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4807g00027 330 Gene3D - 35 131 IPR036388 -
Vium4807g00027 330 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4807g00027 330 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4807g00027 330 Coils Coil 138 179 - -
Vium4807g00027 330 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4807g00027 330 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4807g00027 330 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4807g00027 330 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Vium4807g00027 330 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 238 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00027 Vium-Chr4807 181707 182778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00027 40 232 HSF AT5G54070 47.000 4.76e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium4807g00027 HSF_DNA-bind 2.3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00027 K09419 - gmx:100778060 269.24