Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00024 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGTCGTAAGATCGGAAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAACATTCAAAATAATGAAGAGGTTGCAGTTAAGCTTGAAAATGTCAAGACAAAACATCCTCAGTTGCTATATGAATCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCTGATATTAGATGGTTTGGAGTTGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGCAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTGTTCATTGTAAATCTTTTCTACATCGGGATATCAAACCAGATAATTTCCTTATGGGATTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTGGCCAAAAAATATAGGGATAGTTCAACCCATCAACACATTCCATACAGAGAAAATAAGAATTTAACTGGGACTGCTAGATATGCAAGTATGAATACCCACCTTGGCATTGAGCAGAGTCGAAGAGATGATTTGGAGTCTCTTGGTTATGTCTTGATGTACTTCCTGAGGGGAAGTCTCCCTTGGCAAGGACTTAAAGCGGGAACCAAGAAACAGAAATACGAGAGAATCAGTGAAAAAAAGGTTTCTACCTCTATTGAGGCATTGTGTCGAGGTTATCCAACAGAGTTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTATCTCAAGAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACAATTTTGAAGTATCAGCAATCACAGCTAGCCGCACCCCCTGCACGTGCTGTTGGTCCTGCTGCTGGAACTAGTTCTGCAATGCCACCAGCTGTGACTAATGCTGATAGACAAACAGGAGAGGAAGACGGACGACCTCCTGGTCTGATTTCAGGGGATTCCACAAGGAGAAGAATGTCAGGCACCATCTCAAACACTGTAAATATTTCAAGACAGAAAAATCCTGTCACCATGGATGCTGCTCTTAATAAGGAAGCCATGTTATCAAAGCCCAATGTCTTGGGTCAGTCAAGTGGATCAAGGCGAGCGGGTGTTTCTAGTAGCCGGGATGCATTTGCTGGTAGTGATTTGGATTCTCGTACTCGTACTACTGAGGTTAACCCTGGAATGCGCAAAATAACATCTGGGAGAAATGCTTCTTCTCATGTCAAGAACTATGAAAGTGCTGTCAAGGGCATTGAAGGTTTGCAATTGGAAAATGACAAGAGGGCACATTATTAA 1371 0.4201 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQNNEEVAVKLENVKTKHPQLLYESKLYRVLQGGTGIPDIRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHCKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAVGPAAGTSSAMPPAVTNADRQTGEEDGRPPGLISGDSTRRRMSGTISNTVNISRQKNPVTMDAALNKEAMLSKPNVLGQSSGSRRAGVSSSRDAFAGSDLDSRTRTTEVNPGMRKITSGRNASSHVKNYESAVKGIEGLQLENDKRAHY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00024 456 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium4807g00024 456 MobiDBLite consensus disorder prediction 402 433 - -
Vium4807g00024 456 FunFam Casein kinase I isoform delta-like 1 308 - -
Vium4807g00024 456 FunFam Putative Casein kinase I 1 85 - -
Vium4807g00024 456 PANTHER CASEIN KINASE-RELATED 9 366 - -
Vium4807g00024 456 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vium4807g00024 456 MobiDBLite consensus disorder prediction 306 351 - -
Vium4807g00024 456 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00024 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium4807g00024 456 MobiDBLite consensus disorder prediction 381 433 - -
Vium4807g00024 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium4807g00024 456 MobiDBLite consensus disorder prediction 381 395 - -
Vium4807g00024 456 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00024 456 Gene3D Transferase(Phosphotransferase) domain 1 1 318 - -
Vium4807g00024 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00024 Vium-Chr4807 138198 146253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00024 7 223 EF-hand Containing Proteins AT2G17890 24.889 4.50e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium4807g00024 Pkinase 8.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00024 K02218 - gmx:100786777 838.18