Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00017 ATGGAGAATCACAAGATGGTAGCATCGGTGTCTGTTAAGGAGGAGATAGACAATAACCTTGCGGTGCAGGAAGAGGAAGATGTAGCAGATGTGGGTTCCAGCATGACCTTGGAAAGGGTCGCTGCAGCTAAGAAATTCATTGAGGACCATTACAGGTCTCAGATGAAACTCATCCAACAACGCAAAGAGAGGCGTTTAGAGCTAGAACAGAAGTTAGCATCTGCTCATGTACCAGAAGAGGAACAGATCAATCAATTGAAGGATTTAGAGACCAAGGAAACGGAGTTTATGCGGTTAAAAAGACACAAAATATGTGTTGAAGATTTTGAACTTCTAACCATTATTGGGAGGGGAGCCTTTGGGGAGGTAACACTCTGTCGGGAAAAAACATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAGTGACTGCATTGTGAAACTCTATTACTCTTTTCAAGATGATGAACACTTATATCTCATAATGGAATATTTGCCCGGTGGTGATATAATGACTTTGTTGATGCGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAGAGTGTTTTGGCCATAGAATCTATTCATAAACATAACTACATCCACAGAGATATAAAACCTGACAACCTTCTATTGGACAAAAACGGTCACATGAAGCTATCAGATTTTGGTCTGTGCAAGCCACTTGACTGCTCAAGCCTATCATCTATTCATGAAATGCAGATCCTCGATGATGGGAACTTATATGATACCATGGATGTTGATGGAGCCTTGCCAAATGGCAGAAATGGTAGGCGCTGGAAAAGTCCCTTGGAACAACTACAACATTGGCAAATTAATAGGAGGAAGCTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCCCCTGAAGTATTACTGAAAAAGGGTTACAGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATACTGTATGAAATGCTAGTTGGATATCCTCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATCGTGAACTGGAAAAATCACTTGAAATTTCCAGAGGAGGCCAGATTGACACCTGAAGCCAAGGATCTAATATGCAGGTTGCTTTGTGGTGTTTCACATAGACTTGGCACTAATGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAGAGATGTCGTATGGGACAGGCTCTATGAAACGGAGGCAGCATTTAAACCACAAGTCTTTGGAGAGCTTGACACTCAGAATTTTATGAAATTCGATGAAGTTGAACAACCAAAACCAGCTAGATCTGGATCTGGACCCTTCAGAAAGAAACTCTTAACTTCTCAAGATCTCAGTTTTGTTGGCTATACATATAAGAACTTTGCTGCTGTCAAGGGGATGCGTCAATCTAATGATCCAGGTAGCATGTCACCACAGCGAACATCCATTGACTCCACACACAGTGATTCGGCGGTAAACTATTCCAACTGA 1557 0.4175 MENHKMVASVSVKEEIDNNLAVQEEEDVADVGSSMTLERVAAAKKFIEDHYRSQMKLIQQRKERRLELEQKLASAHVPEEEQINQLKDLETKETEFMRLKRHKICVEDFELLTIIGRGAFGEVTLCREKTSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVASDCIVKLYYSFQDDEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSSLSSIHEMQILDDGNLYDTMDVDGALPNGRNGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYSVECDWWSLGAILYEMLVGYPPFYSDDPVTTCRKIVNWKNHLKFPEEARLTPEAKDLICRLLCGVSHRLGTNGADEIKAHPWFRDVVWDRLYETEAAFKPQVFGELDTQNFMKFDEVEQPKPARSGSGPFRKKLLTSQDLSFVGYTYKNFAAVKGMRQSNDPGSMSPQRTSIDSTHSDSAVNYSN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00017 518 MobiDBLite consensus disorder prediction 492 518 - -
Vium4807g00017 518 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Vium4807g00017 518 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium4807g00017 518 Pfam Protein kinase domain 309 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00017 518 Pfam Protein kinase domain 110 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00017 518 SMART pkinase_C_6 417 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium4807g00017 518 CDD STKc_NDR_like 107 481 - -
Vium4807g00017 518 SUPERFAMILY Protein kinase-like (PK-like) 106 482 IPR011009 -
Vium4807g00017 518 MobiDBLite consensus disorder prediction 490 518 - -
Vium4807g00017 518 FunFam Non-specific serine/threonine protein kinase 193 260 - -
Vium4807g00017 518 SMART serkin_6 109 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00017 518 ProSiteProfiles Protein kinase domain profile. 109 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00017 518 Gene3D Phosphorylase Kinase; domain 1 107 188 - -
Vium4807g00017 518 CDD MobB_NDR_LATS-like 43 104 - -
Vium4807g00017 518 FunFam Non-specific serine/threonine protein kinase 70 192 - -
Vium4807g00017 518 Gene3D Transferase(Phosphotransferase) domain 1 189 256 - -
Vium4807g00017 518 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vium4807g00017 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 469 - -
Vium4807g00017 518 Gene3D Phosphorylase Kinase; domain 1 435 445 - -
Vium4807g00017 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vium4807g00017 518 Gene3D Transferase(Phosphotransferase) domain 1 315 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00017 Vium-Chr4807 70369 80962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00017 1 517 AGC Kinase Gene Family AT2G19400 72.222 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium4807g00017 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00017 K08790 - gmx:100811359 907.516