Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00011 ATGGAGGAAATAACTTCGACGGTTTCAGTGCCATTCTCACTTGGGAATTTAATACAAAAAGATCCATCAGTGACAACCCACATGGAGATAACCGGCCTAAAGCTCAGGGCAAACACTGCACCAGTATTAATATTAAATCCTGCAATTGAAAGTGAAAATCACACAGATAGTGGTCCTCAACCCCAAATTAAAGTGTCTTCAGAAGCAAAGAACAACCAGGTTGGAGCTGACCTTGTCTCAGAAATGGTAAGTCAAGGAAACAATAATTGTTTCCATGCTGAAAACCTAAAGCAGGCAAGAAAAGAAATCCAATCATTGTTGGCTAAGGATTTTAAGTGTGAGCCTATCTCTCAATCGACTCCTGCTGACAAAACTAGTCCTTGTAGGGAGGAATCTTCTGTTTCTGTGGCTAATTGTTGTGAAATAAGTTCACCTATCACCATAAAGGTTGATGATAACACAGTTCATGGAAGGGCAGGTTTGACTGAGCCGCCAGGTGCAGCTATAGAGCCACTGCAGAACATGGTTTCTGTTGCTAGGGGGCATGAGAGTGAAGATGGAAGTGGATCAGATGAGTCTGATAAAAAACCAATTTCTGTGGTTCATGAGATGCCGGAGAAGGCAACATGCTTGGAATTGAGTGGTGCCATCAGTACTACCCCACTATGGGGTTGCTCATCGGTTTGTGGAAGGAGAGAGGAGATGGAAGATGCTATTGCTGTTAGGCCTCATCTTTTTCAAGCTCCTTCAATGATGGTAATGGATGATTATCTGAGTGAAAACTCAAACTTTTCACCAGCCCACTTTTTTGGCGTGTATGATGGACACGGGGGCTGTCAGGTTGCCGATTACTGCCGGGAACATCTTCATTCAGTATTGGTTGATGAGATAACAACTGCACAATCGAGTTTTGATGAACAGAATGGGAGAGAAAACTGGGAGAACCAATGGAAGAAGGCATTCTCCAATTGCTTTCACAAAGTAGATGATGAGGTTGGAGGGGTTGGTGAAGATAATGGAGCAAGTGTTGAACCTCTTGCTTCCGAGGCTGTTGGCTCCACTGCTGTGGTTGCCCTTTTGACTCAAACTCACATAATAGTTGCAAACTGTGGAGATTCAAGAGCTGTCTTGTGTCGCGGAAAAGAAGCAATGCCATTGTCTGATGATCACAAACCAAATAGAGAAGATGAATGGGAAAGGATAGAAGCTTCAGGAGGAAGGGTCATACAATGGAATGGGTACCGAGTTCTAGGTGTTTTGGCAGTGTCAAGATCCATAGGTGACAGGTACTTAAAACCATGGGTAATTCCAGAGCCAGAAGTGAAGTGTATCCAGAGAGACAAAAACGATGAGTGCCTCATTCTGGCCAGTGATGGATTATGGGATGTCATGACAAATGAAGAAGCCTGTGACTTTGCAAGAAGGAGAATCCTTCTTTGGCATAAGAAGAATGGCAACAACTCATCATCACAACAAGGCCAAGGACCTGACCCTGCAGCTCAGTATGCTGCAGAGTATCTATCTAGACTTGCCCTTCAAAGAGGAAGCAAAGATAACATCTCTGTCATTGTTATAGACTTGAAGCCCCAAAGAAAATTCAAGAAAAAAGAATAA 1614 0.4337 MEEITSTVSVPFSLGNLIQKDPSVTTHMEITGLKLRANTAPVLILNPAIESENHTDSGPQPQIKVSSEAKNNQVGADLVSEMVSQGNNNCFHAENLKQARKEIQSLLAKDFKCEPISQSTPADKTSPCREESSVSVANCCEISSPITIKVDDNTVHGRAGLTEPPGAAIEPLQNMVSVARGHESEDGSGSDESDKKPISVVHEMPEKATCLELSGAISTTPLWGCSSVCGRREEMEDAIAVRPHLFQAPSMMVMDDYLSENSNFSPAHFFGVYDGHGGCQVADYCREHLHSVLVDEITTAQSSFDEQNGRENWENQWKKAFSNCFHKVDDEVGGVGEDNGASVEPLASEAVGSTAVVALLTQTHIIVANCGDSRAVLCRGKEAMPLSDDHKPNREDEWERIEASGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWVIPEPEVKCIQRDKNDECLILASDGLWDVMTNEEACDFARRRILLWHKKNGNNSSSQQGQGPDPAAQYAAEYLSRLALQRGSKDNISVIVIDLKPQRKFKKKE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00011 537 Pfam Protein phosphatase 2C 226 520 IPR001932 -
Vium4807g00011 537 Gene3D - 214 537 IPR036457 -
Vium4807g00011 537 FunFam Protein phosphatase 2C 16 214 537 - -
Vium4807g00011 537 PANTHER PROTEIN PHOSPHATASE 183 527 IPR015655 GO:0004722|GO:0006470
Vium4807g00011 537 SUPERFAMILY PP2C-like 220 529 IPR036457 -
Vium4807g00011 537 ProSitePatterns PPM-type phosphatase domain signature. 269 277 IPR000222 GO:0043169
Vium4807g00011 537 CDD PP2Cc 224 527 IPR001932 -
Vium4807g00011 537 ProSiteProfiles PPM-type phosphatase domain profile. 222 527 IPR001932 -
Vium4807g00011 537 SMART PP2C_4 212 525 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00011 Vium-Chr4807 41501 44996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00011 56 536 PP2C-type Phosphatase Gene Family AT1G17550 45.968 3.28e-138 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00011 K14497 - gmx:100812974 808.135