Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00007 ATGAAGAAAGGGAGCTTAAGCTCCGGTCTCAAACTCACTGTTCCTGCATCTGATTGGGGTTCATTTACCAAGTTTTTGTCTGAGTCTGAAAATGAAACGTTCAAGGCAGGGGACTTGCTTGTCGACAAGGAAGGTGTTCGAGTTGTTTCTGAGAAGGAAGTGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTGAATCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCATATGAATATTGAGGAGCCTATTCACAGGCAGATAGCACTTGAGCTAAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTACCATAATGGTGTCATATCAATCATATTAGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAAAAAATTCCAGAGTCATATCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAATACATTATCCATAGGGACTTAAAACCTTCTAATCTGCTAATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGCATAGTCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACACAGCTATATGTCTCCAGAGAGAATCACTACTGACCAGAGTGGCTACGACTACAAAAGTGACATATGGAGCTTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCAGTTTCCATATACACCACCAGATCAACTTGAAGGATGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTTGAAAAACCTTCCCCCACTGCTCCACCAGAAGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTGCAGAAAAATCCAAGAGATAGACCGTCTGCTCGTGACCTTATAAACCATCCTTTTATCAAATTGTATGAGGAGGACTTGAATGTGGATCTTTCAACTTATTTCTACAACGCAGGATCTACACTTGCAACCATATAG 1080 0.4019 MKKGSLSSGLKLTVPASDWGSFTKFLSESENETFKAGDLLVDKEGVRVVSEKEVEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIHMNIEEPIHRQIALELKINQSAQCPYVVVCYQSFYHNGVISIILEYMDGGSLEDLLNKVKKIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHRGEVKITDFGVSIVMENTSGQANTFIGTHSYMSPERITTDQSGYDYKSDIWSLGLILLKCATGQFPYTPPDQLEGWENIFQLIEVIVEKPSPTAPPEDFSPEFCSFISACLQKNPRDRPSARDLINHPFIKLYEEDLNVDLSTYFYNAGSTLATI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00007 359 CDD PKc_MAPKK_plant_like 70 339 - -
Vium4807g00007 359 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Vium4807g00007 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vium4807g00007 359 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00007 359 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00007 359 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00007 359 SUPERFAMILY Protein kinase-like (PK-like) 70 339 IPR011009 -
Vium4807g00007 359 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vium4807g00007 359 FunFam Mitogen-activated protein kinase kinase 6 153 354 - -
Vium4807g00007 359 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 21 336 - -
Vium4807g00007 359 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Vium4807g00007 359 Gene3D Transferase(Phosphotransferase) domain 1 152 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00007 Vium-Chr4807 36205 40989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00007 28 356 MAP Kinase Kinase Gene Family AT4G26070 63.830 3.35e-159 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vium4807g00007 Pkinase 1.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00007 K20603 - gmx:100789241 611.683