Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00005 ATGAAGAAAGGGAGCTTAAGCTCCGGTCTCAAACTCACTGTTCCTGCATCTGATTGGGGTTCATTTACCAAGTTTTTGTCTGAGTCTGAAAATGAAACGTTCAAGGCAGGGGACTTGCTTGTCGACAAGGAAGGTGTTCGAGTTGTTTCTGAGAAGGAAGTGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTGAATCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCATATGAATATTGAGGAGCCTATTCACAGGCAGATAGCACTTGAGCTAAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTACCATAATGGTGTCATATCAATCATATTAGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAAAAAATTCCAGAGTCATATCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAATACATTATCCATAGGGACTTAAAACCTTCTAATCTGCTAATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGCATAGTCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACACAGCTATATGTCTCCAGAGAGAATCACTACTGACCAGAGTGGCTACGACTACAAAAGTGACATATGGAGCTTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCAGTTTCCATATACACCACCAGATCAACTTGAAGGATGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTTGAAAAACCTTCCCCCACTGCTCCACCAGAAGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGA 942 0.4045 MKKGSLSSGLKLTVPASDWGSFTKFLSESENETFKAGDLLVDKEGVRVVSEKEVEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIHMNIEEPIHRQIALELKINQSAQCPYVVVCYQSFYHNGVISIILEYMDGGSLEDLLNKVKKIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHRGEVKITDFGVSIVMENTSGQANTFIGTHSYMSPERITTDQSGYDYKSDIWSLGLILLKCATGQFPYTPPDQLEGWENIFQLIEVIVEKPSPTAPPEDFSPEFCSFISA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00005 313 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 51 312 - -
Vium4807g00005 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vium4807g00005 313 SMART serkin_6 72 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00005 313 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Vium4807g00005 313 Gene3D Transferase(Phosphotransferase) domain 1 152 313 - -
Vium4807g00005 313 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vium4807g00005 313 CDD PKc_MAPKK_plant_like 70 313 - -
Vium4807g00005 313 SUPERFAMILY Protein kinase-like (PK-like) 70 312 IPR011009 -
Vium4807g00005 313 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Vium4807g00005 313 Pfam Protein kinase domain 74 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00005 313 ProSiteProfiles Protein kinase domain profile. 72 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00005 Vium-Chr4807 36203 40427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00005 1 313 MAP Kinase Kinase Gene Family AT4G29810 62.500 1.64e-148 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vium4807g00005 Pkinase 2.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00005 K20603 - gmx:100789241 538.11