Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4807g00004 ATGAAGAAAGGGAGCTTAAGCTCCGGTCTCAAACTCACTGTTCCTGCATCTGATTGGGGTTCATTTACCAAGTTTTTGTCTGAGTCTGAAAATGAAACGTTCAAGGCAGGGGACTTGCTTGTCGACAAGGAAGGTGTTCGAGTTGTTTCTGAGAAGGAAGTGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTGAATCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCATATGAATATTGAGGAGCCTATTCACAGGCAGATAGCACTTGAGCTAAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTACCATAATGGTGTCATATCAATCATATTAGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAAAAAATTCCAGAGTCATATCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAATACATTATCCATAGGGACTTAAAACCTTCTAATCTGCTAATAAATCATAGAGGGGAGCCAGAGAGAATCACTACTGACCAGAGTGGCTACGACTACAAAAGTGACATATGGAGCTTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCAGTTTCCATATACACCACCAGATCAACTTGAAGGATGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTTGAAAAACCTTCCCCCACTGCTCCACCAGAAGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTGCAGAAAAATCCAAGAGATAGACCGTCTGCTCGTGACCTTATAAACCATCCTTTTATCAAATTGTATGAGGAGGACTTGAATGTGGATCTTTCAACTTATTTCTACAACGCAGGATCTACACTTGCAACCATATAG 990 0.4051 MKKGSLSSGLKLTVPASDWGSFTKFLSESENETFKAGDLLVDKEGVRVVSEKEVEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIHMNIEEPIHRQIALELKINQSAQCPYVVVCYQSFYHNGVISIILEYMDGGSLEDLLNKVKKIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHRGEPERITTDQSGYDYKSDIWSLGLILLKCATGQFPYTPPDQLEGWENIFQLIEVIVEKPSPTAPPEDFSPEFCSFISACLQKNPRDRPSARDLINHPFIKLYEEDLNVDLSTYFYNAGSTLATI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4807g00004 329 SMART serkin_6 72 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00004 329 CDD PKc_MAPKK_plant_like 70 309 - -
Vium4807g00004 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vium4807g00004 329 Pfam Protein kinase domain 74 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00004 329 Pfam Protein kinase domain 208 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00004 329 Gene3D Transferase(Phosphotransferase) domain 1 150 211 - -
Vium4807g00004 329 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 21 207 - -
Vium4807g00004 329 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Vium4807g00004 329 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vium4807g00004 329 ProSiteProfiles Protein kinase domain profile. 72 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4807g00004 329 SUPERFAMILY Protein kinase-like (PK-like) 70 309 IPR011009 -
Vium4807g00004 329 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Vium4807g00004 329 Gene3D Transferase(Phosphotransferase) domain 1 212 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4807g00004 Vium-Chr4807 36201 40989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4807g00004 28 326 MAP Kinase Kinase Gene Family AT4G26070 58.055 3.07e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vium4807g00004 Pkinase 4.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4807g00004 K20603 - gmx:100789241 540.421