Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4804g00047 ATGCATAGAGGTGTTCTTCAGAGCTCACCAGTGCAACAAATGATGGCTGGAAACCCTAACTGGTGGAACATCAATATCAATACCATGCCTCCACAAGCTCCTCCTTTCTTCTCCACTCCTTCAAACTTTTCCATCCCTTATGCTCCCTCTTCTCTCCCCTTTCCTTCTTGGAATGAAAATCAAGACCTTCCTGAGTCATGGAGCCAGCTACTCATGAGTGGGGTGGTGGATGAACAAGGTAAGGTTGGGATGGGCCAGTTTCAGACAAAGAAGTTGGAGAACTGGGAGGATCAAATGCTAGGTCAGCCTCCAAACGCTTCTCTTGTTGATGTTAAGCAAGAAAATTCAGTTAACAGCTATGTATACGGCCATGGAAACGAAGAGCTTCAGTCATCAAAGCCATCCTGGTCTCCGAAATCCTGTGCCACTAGTTTCAGTAGCAACATGTTAGATTTCTCTAACAGTAGTAGCACAGATGCAAGGCTTCCTCCACCGGATCGATCTTCTGAGTGCAATAGCACTGCAGCTGGTGGGGCACTGAAGAAAGCTAGGGTTCAACCCTCTGCTACAACACAGGCTACATTCAAGGTCAGAAAGGAGAAGTTAGGCGACAGAATTACAGCTCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGCGGTGGACCAGGGAGTGTGAGGCAGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATAATGAGAACTGCTTGAAAAGGAAAGCAGCTGGAGAACCGGAAACTGAAGAAAAGAAGGGGCTGAGGAGTAGAGGATTGTGTCTGGTTCCAGTGTCGTGCACACTGCAAGTTGGAAGTGACAATGGAGCAGACTATTGGGCACCTGCCCTAGGAGGGGGCTTTCGTTAG 999 0.4745 MHRGVLQSSPVQQMMAGNPNWWNININTMPPQAPPFFSTPSNFSIPYAPSSLPFPSWNENQDLPESWSQLLMSGVVDEQGKVGMGQFQTKKLENWEDQMLGQPPNASLVDVKQENSVNSYVYGHGNEELQSSKPSWSPKSCATSFSSNMLDFSNSSSTDARLPPPDRSSECNSTAAGGALKKARVQPSATTQATFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSGGPGSVRQQNSVQGEKNCIFPEDPGQLLNNENCLKRKAAGEPETEEKKGLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4804g00047 332 MobiDBLite consensus disorder prediction 153 175 - -
Vium4804g00047 332 MobiDBLite consensus disorder prediction 153 181 - -
Vium4804g00047 332 Gene3D - 186 245 IPR036638 GO:0046983
Vium4804g00047 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 314 - -
Vium4804g00047 332 FunFam transcription factor bHLH68 isoform X1 193 246 - -
Vium4804g00047 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 246 IPR036638 GO:0046983
Vium4804g00047 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Vium4804g00047 332 CDD bHLH_AtbHLH_like 194 243 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4804g00047 Vium-Chr4804 239979 244011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4804g00047 1 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.253 7.45e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4804g00047 - - gmx:100786555 588.186