Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4804g00038 ATGGATCCTCCGGCCAAGAGTTGGAGCATCCACATACGCTCCGAGATAACTGCCAAGTACGATGTTATTGGTTGGGTCGGGTCGGGTGCCTACGCCGACGTGTACGAAGGACGGCGCCGCTCGGACGGTGCGGTGGTGGCACTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGCGGATCCTGAAAGGGTCCCAAAACGTGGTCGTTCTGCACGAATTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTCGCCGCCGTGATCGGAAAAGGTGGTGTCGGAGTCGGTGAGGTTAAGAGGTGGATGGTGCAGGCTCTGAGTGCTGTGGATGCGTGCCACCGGAATATGATCGTTCATAGAGACTTAAAACCCGCGAATTTTTTAGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTAGTGGAGTGTGGATTCGATGGTCACCAGGAAGATGATGATGCTTCAAATAGTGAAAGATCACTCCAACAACATCCTGAAGCCATTTCCCAGCTAGACAACTTAAATCAAACTGAACATGAAAACCCAGATCAGAGAACCTTGAGTCATGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATAGATGATGAACTTTGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGCTGTCTGACATCATGTGTTGGAACACGCTGGTTTCGGGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTGTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAGCTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAGCAGAATTGTGAGTGTTTTGGGGAACATTAATGAGGAAACTTGGCCTGGTTGTCCCAAACTTCCTGATTATGGAAAGATCTCATTTTTCAAGGTGGAAAACCCCAGTGGTCTTGAAGCATGCCTGCCCAATTGCACCCCTGATGAAGTTTCCCTAGTCAAAAGACTGGTTTGCTATGATCCAGATAAGAGAGCCACAGCAATGGAGTTGCTTCAAGACAAGTACTTCAGTGAAGTACCACTTCCTGTTCCAGTTTCTGAGTTGCGGGTTCCTTTGATTAGTATTGGACAAGGCAAGGATCGCCCTGGAGGGCACAATGAAATGGGTTCTGATTCTGATTTGGAGGAGTTTAGAACTTTGAATATCACTACAACTGATTCTGATATTTCTATTCAAATACCTTGA 1386 0.4747 MDPPAKSWSIHIRSEITAKYDVIGWVGSGAYADVYEGRRRSDGAVVALKEVHDSQSASREIEALRILKGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGKGGVGVGEVKRWMVQALSAVDACHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVECGFDGHQEDDDASNSERSLQQHPEAISQLDNLNQTEHENPDQRTLSHEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTTSDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGVEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCPKLPDYGKISFFKVENPSGLEACLPNCTPDEVSLVKRLVCYDPDKRATAMELLQDKYFSEVPLPVPVSELRVPLISIGQGKDRPGGHNEMGSDSDLEEFRTLNITTTDSDISIQIP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4804g00038 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vium4804g00038 461 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00038 461 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00038 461 PANTHER CELL DIVISION PROTEIN KINASE 19 409 - -
Vium4804g00038 461 SUPERFAMILY Protein kinase-like (PK-like) 6 418 IPR011009 -
Vium4804g00038 461 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Vium4804g00038 461 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vium4804g00038 461 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium4804g00038 461 MobiDBLite consensus disorder prediction 189 208 - -
Vium4804g00038 461 Gene3D Transferase(Phosphotransferase) domain 1 105 410 - -
Vium4804g00038 461 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00038 461 Pfam Protein kinase domain 21 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4804g00038 Vium-Chr4804 205802 207989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4804g00038 4 461 Core Cell Cycle Gene Families AT4G28980 58.316 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vium4804g00038 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4804g00038 - - gmx:548056 778.474