Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4804g00037 ATGGATCCTCCGGCCAAGAGTTGGAGCATCCACATACGCTCCGAGATAACTGCCAAGTACGATGTTATTGGTTGGGTCGGGTCGGGTGCCTACGCCGACGTGTACGAAGGACGGCGCCGCTCGGACGGTGCGGTGGTGGCACTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGCGGATCCTGAAAGGGTCCCAAAACGTGGTCGTTCTGCACGAATTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTCGCCGCCGTGATCGGAAAAGGTGGTGTCGGAGTCGGTGAGGTTAAGAGGTGGATGGTGCAGGCTCTGAGTGCTGTGGATGCGTGCCACCGGAATATGATCGTTCATAGAGACTTAAAACCCGCGAATTTTTTAGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTAGTGGAGTGTGGATTCGATGGTCACCAGGAAGATGATGATGCTTCAAATAGTGAAAGATCACTCCAACAACATCCTGAAGCCATTTCCCAGCTAGACAACTTAAATCAAACTGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATAGATGATGAACTTTGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGCTGTCTGACATCATGTGTTGGAACACGCTGGTTTCGGGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTGTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAGCTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAGCAGAATTGTGAGTGTTTTGGGGAACATTAATGAGGAAACTTGGCCTGGTTGTCCCAAACTTCCTGATTATGGAAAGATCTCATTTTTCAAGGTGGAAAACCCCAGTGGTCTTGAAGCATGCCTGCCCAATTGCACCCCTGATGAAGTTTCCCTAGTCAAAAGACTGGTTTGCTATGATCCAGATAAGAGAGCCACAGCAATGGAGTTGCTTCAAGACAAGTACTTCAGTGAAGTACCACTTCCTGTTCCAGTTTCTGAGTTGCGGGTTCCTTTGATTAGTATTGGACAAGGCAAGGATCGCCCTGGAGGGCACAATGAAATGGGTTCTGATTCTGATTTGGAGGAGTTTAGAACTTTGAATATCACTACAACTGATTCTGATATTTCTATTCAAATACCTTGA 1350 0.4763 MDPPAKSWSIHIRSEITAKYDVIGWVGSGAYADVYEGRRRSDGAVVALKEVHDSQSASREIEALRILKGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGKGGVGVGEVKRWMVQALSAVDACHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVECGFDGHQEDDDASNSERSLQQHPEAISQLDNLNQTEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTTSDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGVEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCPKLPDYGKISFFKVENPSGLEACLPNCTPDEVSLVKRLVCYDPDKRATAMELLQDKYFSEVPLPVPVSELRVPLISIGQGKDRPGGHNEMGSDSDLEEFRTLNITTTDSDISIQIP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4804g00037 449 ProSiteProfiles Protein kinase domain profile. 20 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00037 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vium4804g00037 449 SUPERFAMILY Protein kinase-like (PK-like) 13 397 IPR011009 -
Vium4804g00037 449 Pfam Protein kinase domain 262 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00037 449 Pfam Protein kinase domain 21 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00037 449 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vium4804g00037 449 PANTHER CELL DIVISION PROTEIN KINASE 19 397 - -
Vium4804g00037 449 MobiDBLite consensus disorder prediction 169 188 - -
Vium4804g00037 449 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium4804g00037 449 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Vium4804g00037 449 Gene3D Transferase(Phosphotransferase) domain 1 105 398 - -
Vium4804g00037 449 SMART serkin_6 20 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4804g00037 Vium-Chr4804 205802 207989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4804g00037 4 449 Core Cell Cycle Gene Families AT4G28980 58.105 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vium4804g00037 Pkinase 2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4804g00037 - - gmx:548056 754.207