Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4804g00021 ATGTATAGACCATTCATGACATGTGATGATCCAAAAGGGGTAGTTGAGTGTGGGGCTATAAGAAAATACAGGACCAGTTCTCAGAAAATGAAGGACAAGACAAAAACTAGGAGGCCGGCTGAGACATCATTGGCTAACAAACAAGACAAAGAGGAGAAGGTTTCAAAAGGATCCGCTGAAAGGTCTTTTGATCCATCATCCTTGCAGCTCATGGAAGTTTCTAGAGGAGCTCAAAGGTTGAACAACATGATTGATTCATGGTCTAGGGGTCTTATGTATGATGGAAGTTCTGAAGATATAGCAAAAGATTTGCTAAAAGGGGCTCTTGACCTGCAAGAATCTCTACTAATGCTGCGCAAGGTGCAAGAAGCTTCACAACACATGGCTACCTTGAAGAGAAGACAAAATGGGAAACCTGAAAGCAGCAGATTTGATGCAATGCCGGTTGATGGAACTGCACATTGTGATCACTTTGGTGAACAAAGTTATCAAATGGGGTTCCGAAGACGTTGGCCTTCAGCTGATGGTTCTTCAAGTAGCTGCCCTGAGGAGCTTAAGAAAGTGATTAAGGAGAGCCTGGTTAGTCAAAATTTGTTCAAAACCACTGAAGGGTTGGATTCATCATCCACATTCCACTCCACAAACTCAAGCCAATCTTCTGGGGCTTGGAATGATAAGCTTTCTGATTCTTCTTTCTCACCAACAACTTCGAGGAGGGAAAGACGATCCAATCTGGTTGCCAAGCTGATGGGTTTAGAAGAAGCCCCTTCAAGATCATTCCCAGCTGTTATACAGAAACAGCTGGAGAGTCCAAAGATTCTGAATCAGAAGAGACATGTATTTGACATAGATATGCCTAAGGTGAGAAAAAATGTTGAGAATGTTAGTCTGGAACGTAAGATGACCTTGAAGGAAATTCTTGAGACTACTCATTTCAATGGACTTTTGAAGAAGAGTCCTGTCAGAGAGCATAATGTTCATGTCCATCCTTCCTTTGATGCTCACTACAAACATGTTGGTGATTTACCTCCTATTGTACTTATGAAACCTCGATGTAGTCCATATCAGGAATGTGTGAACAGTTATGACCATGTTGTTCCTCCAGAAAAGTTATCCCTCAGAAATCTAAAAGCAAAAGTTGCCCCTTCCAAAGTGTTCCAACACAAGGAAGACTCAACCACCAACGTGGGGAGAAAAATGGAAGAACATTTATCCAAAAGGCTTACCAAAGAGGAAAGAACTAAGCTCGTCAGAGAGGTTGTGGAGTTGAAGGAGAAAGAAATCAAGCCTATTGAAAACGAGAAGGCTCCAGGAGGTAAGGTAAGACTGCCTAGTCATGTCAGTCACAAATCACATGTAAATGAAACTGTTGATAGAAAAGCTAAGGTGAAGACCATTGCCACTAGTAGAAAGCTTTCGGAAAAGGAGGTTTTAAAATCCAAACATCAACAACAAAATCTTATACCAGTAGTTGAGGTTTCGAAACCCAAATTTGTGACAAAATCCCAAGAAGATCAAGGAGAAATCAGCTCTACAAGTACCAAGATTAGGAAGCCACAAAGTGGCTCCCGAAGTGAAAAGAATGAGACTCCCAGCAGAAAGAGCACTGTTTCAAATTCAAATACCATATCAAAACCAAAGAGCCAAAAGATTACTTATTCCAAGGAACAGAATAAGAAACAGATGAAGAAGCAAAGGCCTGCTGTTGCTGAGCCTGAAGCAGCTAAACCAGTCGATCAACGGTTAGGCCAAGAAGAAGCAATGAGTGTTGCTGTTTCTCATAAAGATGATTGCCCTGAGATTAGAATAATAACTACAATAGCAGATGATCTTGCGATGGATCATGAAGAAGTATATGCATCTGCAAGTAAGATTAGAGTTTCTGAGCAAAACCAGAGTTCTTCTAGTGATGATTACTCTATGGTCAAGTCTGAACGTGAAAATGATATCATTCTTGCTGAGAAAGCTCATGACATCATCAATATCAGTGAAACAGATTACAAGGCTGACAAAGACAATTCTGAGCTTAAATATTTGCTTCTGACAAGTCAATCATTTATTGAGCATGCAGAGAAGTTCCTCAATCTTGATGTTGACTGTCCCAAGCTCCTACCAAAAAGTGAAACTAAGCGAATATCCAATCTCATACTCTTTTTGGACTGTGCAAATGAAGTCACTGAGCGTAAAAGCTTGCAGGGATCACAAGCAGTTAACCCTTTATTGCTAACTTGTGCGGGGAATCCAAGATTGCACATTTCTTTAGGGAGGTTGGTTGATGAAGTGTGTAGTGCCATTGAGCATCTAACATCTTACAGTGAAAAAGTGGCTTCAGATAATATATATGCAATGATGGAGAGAGATATAAAGGGAAACAATGGACTGATAAATGGAATATGGAACTGGGGTTGGAGGCATGGATTTTCTGCAGATGAAGCTGAGCAAGTTGTGAATGAAGTAGAGGACCTAGTTTTAGGTGGATTGATTGAAGAGATAATTGTAAATTTATGA 2508 0.4047 MYRPFMTCDDPKGVVECGAIRKYRTSSQKMKDKTKTRRPAETSLANKQDKEEKVSKGSAERSFDPSSLQLMEVSRGAQRLNNMIDSWSRGLMYDGSSEDIAKDLLKGALDLQESLLMLRKVQEASQHMATLKRRQNGKPESSRFDAMPVDGTAHCDHFGEQSYQMGFRRRWPSADGSSSSCPEELKKVIKESLVSQNLFKTTEGLDSSSTFHSTNSSQSSGAWNDKLSDSSFSPTTSRRERRSNLVAKLMGLEEAPSRSFPAVIQKQLESPKILNQKRHVFDIDMPKVRKNVENVSLERKMTLKEILETTHFNGLLKKSPVREHNVHVHPSFDAHYKHVGDLPPIVLMKPRCSPYQECVNSYDHVVPPEKLSLRNLKAKVAPSKVFQHKEDSTTNVGRKMEEHLSKRLTKEERTKLVREVVELKEKEIKPIENEKAPGGKVRLPSHVSHKSHVNETVDRKAKVKTIATSRKLSEKEVLKSKHQQQNLIPVVEVSKPKFVTKSQEDQGEISSTSTKIRKPQSGSRSEKNETPSRKSTVSNSNTISKPKSQKITYSKEQNKKQMKKQRPAVAEPEAAKPVDQRLGQEEAMSVAVSHKDDCPEIRIITTIADDLAMDHEEVYASASKIRVSEQNQSSSSDDYSMVKSERENDIILAEKAHDIINISETDYKADKDNSELKYLLLTSQSFIEHAEKFLNLDVDCPKLLPKSETKRISNLILFLDCANEVTERKSLQGSQAVNPLLLTCAGNPRLHISLGRLVDEVCSAIEHLTSYSEKVASDNIYAMMERDIKGNNGLINGIWNWGWRHGFSADEAEQVVNEVEDLVLGGLIEEIIVNL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4804g00021 835 MobiDBLite consensus disorder prediction 204 240 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 532 551 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 204 241 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 432 460 - -
Vium4804g00021 835 PANTHER OS01G0228800 PROTEIN-RELATED 1 834 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 499 582 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 25 59 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 25 65 - -
Vium4804g00021 835 Coils Coil 406 426 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 503 519 - -
Vium4804g00021 835 MobiDBLite consensus disorder prediction 552 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4804g00021 Vium-Chr4804 163959 168365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4804g00021 676 832 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 34.524 1.72e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4804g00021 - - gmx:100797863 1288.86