Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4804g00016 ATGGGGGAAGAAGAAGGAGGAGATATCGCTCCGAAGAATGCGTTGTCGTCGGAAGTTGTTCCGCCGGCGGTAACGTCTACGGCGGCGCTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTTGATTTCACGGGCGCGCCGGATCATCCCCAGCAGCAGCCGGTGGCGGCGTTGCCGTTGCCGCCACAGGCGCCTCATTCGAGGATTGGGAAACCAGAATCTCCAAAATCTAGATCAAGATCTAACTTTGAAATGAAAGATGCTACACCCAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAACGAAGCTGCTAGAAGAGAAGCTGTTGAAGCTACCTTGGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCTAGTAGCCCTCATGGAACACGTGATAGCAGGGAGGAAGCCGGGGAAGTTTTAATATTAGGAAAACATAACAAGGGGTGTCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTTCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAAAGGCAGGCTTTGTTTCATGGAGATCAAAATAACATGGCATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACAGCCAAGGATCCATCGATTAGCAAGTTGGGACAACAGGTAAACCATGTTAGAGGTCCAGCACCTTCCTCATCTTTGTCACCTGTCTCAGGCGCTCGTGTTGGAACTGCAACATTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATTATTCAACCACAGCACCTCAAGGAGCTATGCTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCAATGACACTTTCAGACCAGAAAATTTTAATGGAAAAGCATGCAGAAGATCAGACAGAAACTTCCCTTGCTTCGTCAAGTCAAGAGCAATTACCACCAAGTCAAAAGGAAGGTCATGTTGAGAAGACTGTAGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATGATTCCAGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCAGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCCGCTTCCCCTATTGGGCCAATGGCTCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACGAAGTTTAGGGATTTTCTCAATAGGGTTATAACTATGGGAGAAATAAATGGCAAAAACAAAGTGTTCTTCGTTGGCCAGAAATGA 1500 0.4467 MGEEEGGDIAPKNALSSEVVPPAVTSTAALEVPAKKLARQLDFTGAPDHPQQQPVAALPLPPQAPHSRIGKPESPKSRSRSNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFWPTAKDPSISKLGQQVNHVRGPAPSSSLSPVSGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAMTLSDQKILMEKHAEDQTETSLASSSQEQLPPSQKEGHVEKTVADDCSSANQTDKISPDDSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPIGPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINGKNKVFFVGQK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4804g00016 499 SMART CXC_2 91 131 IPR033467 -
Vium4804g00016 499 SMART CXC_2 176 217 IPR033467 -
Vium4804g00016 499 ProSiteProfiles CRC domain profile. 92 216 IPR005172 -
Vium4804g00016 499 MobiDBLite consensus disorder prediction 71 86 - -
Vium4804g00016 499 MobiDBLite consensus disorder prediction 357 422 - -
Vium4804g00016 499 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 179 213 IPR005172 -
Vium4804g00016 499 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 93 128 IPR005172 -
Vium4804g00016 499 PANTHER TESMIN/TSO1-RELATED 48 487 IPR028307 -
Vium4804g00016 499 MobiDBLite consensus disorder prediction 388 402 - -
Vium4804g00016 499 MobiDBLite consensus disorder prediction 362 376 - -
Vium4804g00016 499 MobiDBLite consensus disorder prediction 54 68 - -
Vium4804g00016 499 MobiDBLite consensus disorder prediction 40 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4804g00016 Vium-Chr4804 123551 130463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4804g00016 33 487 CPP Transcription Factor Family AT4G29000 58.546 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vium4804g00016 TCR 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4804g00016 - - gmx:100818116 871.692