Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4804g00009 ATGTCAACAGCCCCAGCGCCGTCTTCGCCGCCGTCCAACGGCACCGCGCCTCCGCCGTCCACCCCGTCGGCACCACCGCCCGCCACACCTTCGGCACCTCCTCCTGCGACTCCGTCGTCACCTCCACCTTCACCTCCGTCATCTCCGCCCCCAGCGACTCCCTCCGCTCCTCCGCCGGCGACACCTTCTTCGCCACCTCCGTCGACTCCGTCTGCTCCTCCACTGTCTACTCCTTCGACTCCATCCCCGCCGTCAACCACTCCACCATCGAGTTCTCCTCCCTCGCCTCCGTCTGGTTCTCCTCCCTCACCGCCGTCGGGGTCTACACCATCGCCACCTAGTAGCGGTGGCGGCGGTGGAAGCACTCCAAGTCCACCGTCTCGGAGCTCGCCTTCTCCTCCGTCCGGATCGAGTCCAACCACGCCTTCGCCTCCTCCGTCGTCTTCGTCTGGTATTTCGACTGGTGTGGTGGTCGGAATCGCCGTGGGGGCAGTCGCGGTTCTTGTTGTGTTAAGCATTCTTTGCATATGCTGTCGGAAGAAGAAGAGAAGACGCGACGAGGAGTACTATGCTCCGCCGCCGCCGCAACCGCTGAGGGGACCCAAAGATGATTACGGTGGTCCGCCGCGTCAATGGCAGCACAATGTTCCTCCTCCGCAAGATCATGTGGTTTCAATGATGCCTCCAAAGCCATCACCTCCACCGGCTCCCGCTTATGCTGCTCAACCTCCTCCACCTCCGCCTCCTTTTATCATCAGCAGTGGCGGGTCTGGATCAAACTATTCAGGTGGCGAACCACTTCCTCCTCCTTCTCCGGGAATTTCATTGGGGTTCTCTAAAAGCACTTTTACCTACGAGGAGTTGGCACGAGCAACGGATGGATTCTCTGATGCGAACCTCCTCGGACAAGGTGGATTCGGATATGTTCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTCCAGGCTGAGGTTGAGATAATTAGCCGTGTTCATCACAAGCATCTTGTATCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGTTGCTTGTTTACGAATTTGTTCCGAACAACACAATGGAGTTCCATTTGCACGGAAGAGGACGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTGGCGTATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTTAAGTTCGAAGCAAAGGTTGCAGATTTCGGTCTTGCTAAGTTTTCTTCTGATGTTAATACTCATGTTTCTACACGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTCCTTGAGTTAATAACTGGACGGCGACCAGTTGATAAAACTCAGACATTCATGGAGGATAGTTTGGTAGACTGGGCTAGACCTTTGCTCACACGAGCTTTGGAAGAAGATGATTTTGACTCTATTATTGACCCAAGGCTTCAGAATGACTATGACCCTAATGAGATGGCACGAATGGTGGCATGTGCCGCAGCTTGCACACGTCATTCAGCAAAGCGCCGACCAAGGATGAGTCAGGTTGTGCGTGCTTTGGAAGGAGATGTGTCTCTAGCAGATCTTAACGAAGGAATCAAACCTGGACACAGCACAATGTACAGTTCTCATGAAAGTTCAGATTATGATACTGTACAGTACAGAGAAGACATGAAAAAGTTCAGAAAAATGGCACTGGGAACTCAGGAATATGGTGCAAGCAGCGAATACAGTGCAGCTACAAGTGAGTATGGTTTAAACCCATCTGGTTCGAGCAGTGAAGCGCAGAGCCGCCAAACCACAAGAGAAATGGAAATGAGAAAGATGAAGAACAGTCAAGGTTTCAGTGGAAGCTCTTGA 2004 0.5215 MSTAPAPSSPPSNGTAPPPSTPSAPPPATPSAPPPATPSSPPPSPPSSPPPATPSAPPPATPSSPPPSTPSAPPLSTPSTPSPPSTTPPSSSPPSPPSGSPPSPPSGSTPSPPSSGGGGGSTPSPPSRSSPSPPSGSSPTTPSPPPSSSSGISTGVVVGIAVGAVAVLVVLSILCICCRKKKRRRDEEYYAPPPPQPLRGPKDDYGGPPRQWQHNVPPPQDHVVSMMPPKPSPPPAPAYAAQPPPPPPPFIISSGGSGSNYSGGEPLPPPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTMEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDDFDSIIDPRLQNDYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSTMYSSHESSDYDTVQYREDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMKNSQGFSGSS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4804g00009 667 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vium4804g00009 667 SMART serkin_6 295 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00009 667 Gene3D Phosphorylase Kinase; domain 1 275 370 - -
Vium4804g00009 667 Pfam Protein tyrosine and serine/threonine kinase 300 568 IPR001245 GO:0004672|GO:0006468
Vium4804g00009 667 Gene3D Transferase(Phosphotransferase) domain 1 371 579 - -
Vium4804g00009 667 MobiDBLite consensus disorder prediction 126 146 - -
Vium4804g00009 667 MobiDBLite consensus disorder prediction 222 252 - -
Vium4804g00009 667 MobiDBLite consensus disorder prediction 10 111 - -
Vium4804g00009 667 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4804g00009 667 FunFam Proline-rich receptor-like protein kinase PERK1 371 579 - -
Vium4804g00009 667 MobiDBLite consensus disorder prediction 619 647 - -
Vium4804g00009 667 FunFam proline-rich receptor-like protein kinase PERK1 273 370 - -
Vium4804g00009 667 SUPERFAMILY Protein kinase-like (PK-like) 270 568 IPR011009 -
Vium4804g00009 667 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 163 630 IPR047117 -
Vium4804g00009 667 PRINTS Proline rich extensin signature 46 67 - -
Vium4804g00009 667 PRINTS Proline rich extensin signature 10 26 - -
Vium4804g00009 667 PRINTS Proline rich extensin signature 31 43 - -
Vium4804g00009 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vium4804g00009 667 MobiDBLite consensus disorder prediction 184 275 - -
Vium4804g00009 667 MobiDBLite consensus disorder prediction 1 153 - -
Vium4804g00009 667 MobiDBLite consensus disorder prediction 618 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4804g00009 Vium-Chr4804 73333 77816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4804g00009 112 650 Trihelix Transcription Factor Family AT1G70460 51.381 3.07e-177 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium4804g00009 PK_Tyr_Ser-Thr 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4804g00009 - - gmx:100781944 865.914