Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4803g00002 ATGCCCACCATGAACTTCTTCCTATCTGCTTTATTGCTTCACTCCTTCATGGCTACTGTGTTGGGAAAAGAAGCATCGCATATTATCATGCACAATGGCGGAGGCTATCCTTATGCTTCTCCCCCTCCTCCGATGTGCCCCCCGCCTCCACCCCCACCGTGTCAGACAAGGTTAGAGAATGGTCGACGAACTCTGGTGGGCTTCACTGGTTCGGTTGACCGAAACAAATACATCGGTGACTGGAGGGGTGACGACCCTTGCAAATTCAACGGGATACGATGTGCAGAATATCCAGACCCGGAAAAGCAGCGAGCAATTGCGGGAATAGACCTGAACGGAGCTGGGCTGTCTGGGAAAGACCGCACACCTCTGCTCCTGTCGGGGATCTTGGACAAGATACCAGAGCTGACCTTCTTCCACGTGAACTCCAACAACTTCACCGGTGCCATCCCAAGGGAAATAACCCAGTACAAATATTTCTTCGAGTTGGACCTCAGTAACAACAAGCTGAAGGGCGAGTTTCCAAAGGAAGTTCTCCAGTCCTCGCAGCTGGTTTTCCTTGACCTCAGGTTCAACACTCTCTACGGCCCCATACCTCCCCAGCTCTTCTACCTCAAATATCTCGATGTCATTTTCATCAACAACAATAAATTTACTGGCAGTCTCCCCGATGCCTTTGCCTCCACCCCGGCCAGGTACCTCACTTTTGCCAACAACCTTCTCACCGGTCCAATCCCCCCCTCCGTCGGAGCTGCCAAAAACCTCGTCGAAGTCCTCTTCTTGGGCAACAACTTCCAGGGATGCTTGCCCTACCAGATTGGCCTCCTCCGAAAGGCCACCGTCTTTGACGTCAGCAACAACTGTTTGACCGGTCCCATCCCACGCTCCTTCGGCTGCCTGGAGAGCATCCGGTACCTCAACTTGGAGCACAACAAGTTCTACGGTGAAGTTCCCGAAACGGTGTGTCAGCTCCCAGGGCTCCGCGACAGAGGCAACTTCTCCTTATCGAACAACTATTTCACTCAGGTTGGCCCTGCATGCAGGAGGCTGATCGAGTGCAATGTGCTGGACGTGAGCAACAACTGCATCCTTGGCCTTCCCAATCAAAGGCCCCACGGCGAATGCTCCCACTTCTTCTCCAACCTCAAGCCCTGCCCCAATCCAAAGTCTCTCAATTACGTTCCCTGCAAAAAGTACGATCCCGGCAGCCACACCCACACCACCACCTCCACTCCTCCTGCTCCTCTCTCTTACAACTCTCTCGATCCCCGTCTTCATCGCTAG 1284 0.535 MPTMNFFLSALLLHSFMATVLGKEASHIIMHNGGGYPYASPPPPMCPPPPPPPCQTRLENGRRTLVGFTGSVDRNKYIGDWRGDDPCKFNGIRCAEYPDPEKQRAIAGIDLNGAGLSGKDRTPLLLSGILDKIPELTFFHVNSNNFTGAIPREITQYKYFFELDLSNNKLKGEFPKEVLQSSQLVFLDLRFNTLYGPIPPQLFYLKYLDVIFINNNKFTGSLPDAFASTPARYLTFANNLLTGPIPPSVGAAKNLVEVLFLGNNFQGCLPYQIGLLRKATVFDVSNNCLTGPIPRSFGCLESIRYLNLEHNKFYGEVPETVCQLPGLRDRGNFSLSNNYFTQVGPACRRLIECNVLDVSNNCILGLPNQRPHGECSHFFSNLKPCPNPKSLNYVPCKKYDPGSHTHTTTSTPPAPLSYNSLDPRLHR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4803g00002 427 Gene3D Ribonuclease Inhibitor 62 230 IPR032675 -
Vium4803g00002 427 SUPERFAMILY L domain-like 90 367 - -
Vium4803g00002 427 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 225 317 - -
Vium4803g00002 427 Pfam Leucine Rich Repeat 281 299 IPR001611 GO:0005515
Vium4803g00002 427 MobiDBLite consensus disorder prediction 402 417 - -
Vium4803g00002 427 FunFam Leucine-rich repeat receptor protein kinase EMS1 128 224 - -
Vium4803g00002 427 Gene3D Ribonuclease Inhibitor 231 421 IPR032675 -
Vium4803g00002 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 73 409 - -
Vium4803g00002 427 MobiDBLite consensus disorder prediction 402 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4803g00002 Vium-Chr4803 3896 5542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4803g00002 57 380 Leucine-rich Repeat extension Gene Families AT3G24480 42.331 5.54e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4803g00002 - - gmx:100795489 555.829