Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4800g00002 ATGGCTGCATCATCCACCTATGATGTGTTTCTCAGCTTCAGAAGAGGATACACAGGCGATAGTTTTGTTAGCAATCTCTACAAATCTCTCTGTAAGAGGGGAATTCACACTTTCAAGGATGATGAGATGCTTCTGAAGAGAAAGGAATCAATAGCAACGCTTCTGAATGCAATTGAAGAGTCTAGGATTGCCATTGTTGTGCTCTCTCACAACTATGCTTCTTCCTACTTCTGTTTGGATGAACTTGCCAGAATCCTTCACTGCCAGACCAAAGGACTGTTGGTTATACCGGTCTTCTATAAGGTACACCCTTCTGATGTCAGACATCAGAAAGGGAGTTATGGAGAAGCATTGACTATGAATCAGAAAAAATTCGAAGATATGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCACCAGGTAGCTAACTTGTCTGGCTATCATATCGAAGACGGAGTTGGATATGAATACAAGTTTATTAAGAGAATTGTTGACGATGTCTATGACAAGATTACTCGTGATTCTTTTACACATGTTTCGGATTACCCAATTGGACTACAGTCACAAGTGCTAGAAGTGAGGAAGCTTTTGGATTTTGGATCTGAGGATGGTGTTCACATGATAGGAATCCACGGGATGGGTGGGATAGGAAAATCAATACTTGCTCGAGCTGTCTACAATGATTTAATTGGTGAGAATTTTGATGGATTGTGTTTTCTTGAAAACGTGAGAGAAAAAACAAACAAACATGGGTTAAAACACCTGCAAAGCATCCTTCTATCACAGATATTAGAAGAGAAGGACATCAACTTTACAAGTACGCAGCAAGGAATTTCTAAGATAAAGTATAGGCTCAAGATGAAGAAGGTTCTCCTGGTTCTGGATGATGTTAACAAGCCGGACCAATTACAAGCAGTTGCTGGAGGATGTGACTGGTTTGGTCCTGGCAGCAGAATCATAATCACAACTCGGGACAACAAATTGTTGGAAAATCATAGAGTTACAATGACATACGAGGTGAAGGGATTGAATGACAATGATGCTCTTCAGCTGCTTAAATGGAAAGCTTTCAGAAATGAAAAGGCTGATCCAGATTATGAGTTAGCCTTGAATCGTCTTGTAACTTATGCTTCTGGCCTTCCACTGGCTTTAGAAGTAATAGGAGGCAGCTTGGTTGGAAAAAGTATAGAAGGATGGAAGACCGCTATCCAACAATATGAAATGATTCGCAAGAGGGACATCCTGAATATGCTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTAATATTGCCTTTTTCTTAGAAGGACACGCACTGACACTGGTGGAATATATACTTCATGCTTGTTATGATCGTAGCATGAAACATCACATTGGCATGCTGGTTGAAAGATCTCTGTTGAAGTTTGATTATTTTGATAATAGACTTAAAATGCATGACTTGCTAAGGGACATGTCTAGGATTGTCTGGAAGGAATTACAGAAAGAGCCGGGGAATAACAGTAGATTATGGTTACATAAAGATGTGATTCATGTTTCCAATAACAATAGAATCTTTGAAAGTGAAATTAACCATCTTGTTTTCTCCATATCTGCCATACAGAGAATAGTAGGATCGTATGCAAACACCTTCAAGAGGATGAAAACCCCCGAAAAACATGATAAAAAATTTCAGTTTTTAAATCATTTTCTTCAAAGTTTGAGAGCACTGATATGGTTCAGAATTTCTTCAAATTGTTTACCATCTTCGTTGGATAACTTATTGAAGAAGTACGAGACTCTAACCGTCATGAATTTTGACGAGTGCAGAATTTTGACGCAGTTGCCTGATCAAGCTTATTAG 1860 0.3892 MAASSTYDVFLSFRRGYTGDSFVSNLYKSLCKRGIHTFKDDEMLLKRKESIATLLNAIEESRIAIVVLSHNYASSYFCLDELARILHCQTKGLLVIPVFYKVHPSDVRHQKGSYGEALTMNQKKFEDMEKVQKWKMALHQVANLSGYHIEDGVGYEYKFIKRIVDDVYDKITRDSFTHVSDYPIGLQSQVLEVRKLLDFGSEDGVHMIGIHGMGGIGKSILARAVYNDLIGENFDGLCFLENVREKTNKHGLKHLQSILLSQILEEKDINFTSTQQGISKIKYRLKMKKVLLVLDDVNKPDQLQAVAGGCDWFGPGSRIIITTRDNKLLENHRVTMTYEVKGLNDNDALQLLKWKAFRNEKADPDYELALNRLVTYASGLPLALEVIGGSLVGKSIEGWKTAIQQYEMIRKRDILNMLKVSFDALEEEEKSVFLNIAFFLEGHALTLVEYILHACYDRSMKHHIGMLVERSLLKFDYFDNRLKMHDLLRDMSRIVWKELQKEPGNNSRLWLHKDVIHVSNNNRIFESEINHLVFSISAIQRIVGSYANTFKRMKTPEKHDKKFQFLNHFLQSLRALIWFRISSNCLPSSLDNLLKKYETLTVMNFDECRILTQLPDQAY 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4800g00002 619 Gene3D - 170 337 IPR027417 -
Vium4800g00002 619 Gene3D - 342 421 IPR042197 -
Vium4800g00002 619 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 173 - -
Vium4800g00002 619 Pfam NB-ARC domain 192 407 IPR002182 GO:0043531
Vium4800g00002 619 SMART till_3 6 144 IPR000157 GO:0007165
Vium4800g00002 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 435 IPR027417 -
Vium4800g00002 619 ProSiteProfiles TIR domain profile. 5 171 IPR000157 GO:0007165
Vium4800g00002 619 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 616 IPR044974 GO:0006952
Vium4800g00002 619 Gene3D - 422 494 IPR036388 -
Vium4800g00002 619 Pfam TIR domain 7 170 IPR000157 GO:0007165
Vium4800g00002 619 Gene3D - 2 169 IPR035897 -
Vium4800g00002 619 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 147 IPR035897 -
Vium4800g00002 619 PRINTS Disease resistance protein signature 284 298 - -
Vium4800g00002 619 PRINTS Disease resistance protein signature 207 222 - -
Vium4800g00002 619 PRINTS Disease resistance protein signature 595 611 - -
Vium4800g00002 619 PRINTS Disease resistance protein signature 377 391 - -
Vium4800g00002 619 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4800g00002 Vium-Chr4800 9648 12220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4800g00002 184 549 WRKY Transcription Factor Family AT5G45050 33.243 9.99e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4800g00002 - - vun:114181900 945.266