Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4800g00001 ATGCTTCTTGCCTGCCATTGTTTTGAAGAAGAATGGAAATGTGCTATAAATGAAAATGACCCTGTTGGACTGGAGTCACGTTCAGATGCATTCTGCTACGATGTGTTCCTCAGCTTCAGAGACTTGGACACACTCTATGGTTTTACGGGCTATCTCTTCAAAGCTCTTCATGACAGTGGAATCCACACTTTCATTGATGATGAAAACCTTCAGAGAGGAGAGGAAATTACACCAACAACTGTGAAAGCAATTGAAGAGTCCAGGATTGCTATCACTGTGCTTTCTATAAACTATGCTTCTTCCACCTGGTGCTTAGATGAACTTGCAACCATTCTTGACTGCCTTAAGAGAGAAAGACTGCTGGTTTTACCAGTCTTTTATTATGTGGATCCCACTCAGGTGCAATTGCAGAAAGGCAGGTTTGGAGAAGCCTTGACTAAACATGAGGAGAGGCTCAAGCATAACATGGAAAAGTCATTGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTGTTTTTCTTTCATATCGACCATGGGGATGGTTATGAATATGAGCTTATTGGGAAGATTGTGGAGTGGGTCTCCAAGAAGATTAATCGTGCTAATTACCCAATTGGACTAGAGTCACAAGTGCAAGAAGTAATGAAACTTTTGGATGTTGGATGTGATGGTGGTGCCCACATGATCGGGATTCATGGAACTGGCGGGATTGGAAAATCGACACTTGTTCAAGATGTTTATAATAATTTGATTTCTGAAAGGTTTGATGCTTCATGTTTTATTGAAAATGTGAGTGAAAAATCAAACAAGCATGGGTTACAATACCTCCAAAGCACCATTCTTGAGAATTTACTTGGAGAGAAGGACATCAAGTTAACTAGTGTGGAACAAGGAATTTTAATGATACAACGCAGGCTCCAGAAAAAGAAGGTTCTCTTGATTCTAGACGATGTTGACAGACAGGAGCAATTGCAGGCAGTTGTTGGAAGAGCTGATTGGTTTGGTCGTGGCAGCAGAGTCATAATCACAACACGAGATGAACAGCTCCTTGCCTCCCATGATGTTCAAATAACTTATGAGGTGAAGAAATTAAGTAACAAGGATGCTCTTGTATTGCTTAAATGGAAAGCTTTTAAAAAGCATGACTTTGATCCAAGGTATAAGGAGCTCTTGAATTGTGCAGTAACTTTTTCTGATGGCATTCCATTAGCTTTGGAAGTAATAGGTTCCAACTTGTGTGGAAAAAGTGTAGAAGAATGGAAATCTGTCATTCATCAATTAGAAAAATGTCCCGATAATCCGGTCGAAGCAATACTTAAATCAAGCTTTGATTCTTTGGAGGAAAAAGAAAGGAGTGTTTTCCTTGACCTTGCTTGTTGCTACAAAGGATATGAATTGGCAGAGGTCGAAGATATACTTCAAGCTCATTATGGTCAGAACATGAGGTGTTACATTGACTTATTGGTTGACAAATCTTTAGTTAAGCTTAGTCATGGTACAAAACCTTGTTATGACAGAGTTACATTGCATGACTTGATTGAGGACATGGGTAAAGATATTGTCCGACAGGAATCATTGATAGGGCCAGGTGAGCGTACGAGATTATGGTTACTCGAAGATGTAAGACAACTTTTAGAAAACAACAGGGGAACTAGTAAAATTGAAATCATATGTCTGGATTTCTCCATATTTGATCAAGAAGGAAAAGTAGAATGGGATGGAAAGGCCTTCCAGAATATGCAAAACCTCAAAACACTTATTATTAGACATGGTAGATTTTCCAAAGGTCCAAAATATCTCCCAGATAATATGAGAATACTTGAATGGTGGAGATATCCGTCAAATTCTTTACCATCTGATTTTCATTCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTAGTATTTCGACAATTGAGTTGACAAACTTATTGAAGGCAAGTTTAATAAGTGCATTTTCCTTATCTTGTAAATTGATAAATCCACTGTAA 1995 0.386 MLLACHCFEEEWKCAINENDPVGLESRSDAFCYDVFLSFRDLDTLYGFTGYLFKALHDSGIHTFIDDENLQRGEEITPTTVKAIEESRIAITVLSINYASSTWCLDELATILDCLKRERLLVLPVFYYVDPTQVQLQKGRFGEALTKHEERLKHNMEKSLKWKMALHQVANLFFFHIDHGDGYEYELIGKIVEWVSKKINRANYPIGLESQVQEVMKLLDVGCDGGAHMIGIHGTGGIGKSTLVQDVYNNLISERFDASCFIENVSEKSNKHGLQYLQSTILENLLGEKDIKLTSVEQGILMIQRRLQKKKVLLILDDVDRQEQLQAVVGRADWFGRGSRVIITTRDEQLLASHDVQITYEVKKLSNKDALVLLKWKAFKKHDFDPRYKELLNCAVTFSDGIPLALEVIGSNLCGKSVEEWKSVIHQLEKCPDNPVEAILKSSFDSLEEKERSVFLDLACCYKGYELAEVEDILQAHYGQNMRCYIDLLVDKSLVKLSHGTKPCYDRVTLHDLIEDMGKDIVRQESLIGPGERTRLWLLEDVRQLLENNRGTSKIEIICLDFSIFDQEGKVEWDGKAFQNMQNLKTLIIRHGRFSKGPKYLPDNMRILEWWRYPSNSLPSDFHSKELAICKLPCSSISTIELTNLLKASLISAFSLSCKLINPL 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4800g00001 664 PRINTS Disease resistance protein signature 399 413 - -
Vium4800g00001 664 PRINTS Disease resistance protein signature 229 244 - -
Vium4800g00001 664 PRINTS Disease resistance protein signature 306 320 - -
Vium4800g00001 664 PRINTS Disease resistance protein signature 579 595 - -
Vium4800g00001 664 SMART till_3 32 172 IPR000157 GO:0007165
Vium4800g00001 664 SUPERFAMILY "Winged helix" DNA-binding domain 436 547 IPR036390 -
Vium4800g00001 664 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 648 IPR044974 GO:0006952
Vium4800g00001 664 Pfam TIR domain 33 198 IPR000157 GO:0007165
Vium4800g00001 664 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 172 IPR035897 -
Vium4800g00001 664 Pfam NB-ARC domain 209 448 IPR002182 GO:0043531
Vium4800g00001 664 FunFam Disease resistance protein (TIR-NBS-LRR class) 30 201 - -
Vium4800g00001 664 Gene3D - 364 448 IPR042197 -
Vium4800g00001 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 458 IPR027417 -
Vium4800g00001 664 ProSiteProfiles TIR domain profile. 31 199 IPR000157 GO:0007165
Vium4800g00001 664 Gene3D - 196 359 IPR027417 -
Vium4800g00001 664 Gene3D - 31 195 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4800g00001 Vium-Chr4800 7044 9837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4800g00001 81 635 WRKY Transcription Factor Family AT4G12020 29.453 4.82e-56 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4800g00001 - - vum:124839237 1327.77