Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium479g00013 ATGCTTCAGATCATTGGTTCTTCCCATGCCACAATTATATATACCTTATCACTTACCACCTCAAACACTCACTGCACTTTTAATCATCTCTCTCTCTCTATATATCTCTTTCTCTCTCTCTCTCTCTCCCTCTCCATCTTGCAGGAAACTATGAAGTCAAGATTTCTCAGAGGGTGTCTGAACAAGTGCAAGAAAATGTGCCTGAACAAGTGCATATCTTGTGAGGAATGCTGTGAACGGGCTTGGTGGTGTTGTTTGCATGAAGGTTGTTCAGATATTCCAAGTGATGTTCCAAAGGGTCACTTGGTTGTGTATGTGGGAGAGAAGCACAAGAGATATGTGATCAAGATTGGTTTGCTCCATCATCCCCTCTTCAGGGCGTTGTTGGATCAAGCTCAGGAAGAGTACGATTTCATTGCTGACTCAAAACTCTGCATTCCCTGCGATGAACACCTCTTTCTCAGTGTCCTTCGATGTGCTACCTCCCCACAGAACCAACCAGTCTGTCTGTGTCTCTGA 519 0.4432 MLQIIGSSHATIIYTLSLTTSNTHCTFNHLSLSIYLFLSLSLSLSILQETMKSRFLRGCLNKCKKMCLNKCISCEECCERAWWCCLHEGCSDIPSDVPKGHLVVYVGEKHKRYVIKIGLLHHPLFRALLDQAQEEYDFIADSKLCIPCDEHLFLSVLRCATSPQNQPVCLCL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium479g00013 172 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 73 155 IPR003676 GO:0009733
Vium479g00013 172 Pfam Auxin responsive protein 80 159 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium479g00013 Vium-Chr479 128213 129104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium479g00013 80 162 Calmodulin-binding Proteins AT4G34750 46.067 8.95e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium479g00013 K14488 - gmx:100812927 217.238