Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium479g00010 ATGGATCGTGAAGACTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGGAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGAATTCTCATACAACTTTGAACAGCAAGGATGATTTGGAACTGGAGGTACTTGATGGATTGCTAGATGATGTGGAAATTGATGATCTTGAAGGAGCTGATGGTTTCCCGGGTGCATGTGAAGAATATTTTTTTGATTTTGGATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCGGAAAGTCATTCGTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCTATTGCACACTCTGAAAGCAAAAATGATTCTCTGGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTGCAAGAGTTGGATAACTATCGTCATTTAGCTGGTGGTATACTGACTTGTAAGAAGGACAAGGGTCCTGTCGAGAAAGGCCAACCTGCTGCACTTAGAGAGAAAAGGTTCCGGAAGCCTACGCAAAGGTATATTGAAGAATTTTCAAATGCGAGGTCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTAACTCATCATGTAATGTACTTCATATAAGAATTAAATCATCGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTAGCAAAGGGCATCAGAAGAAAGAGAAACTTCAGTATGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGTTGAGCAAAATGACGAGTTAGCCCTGCGTCCCTTACCATTTAATGTGGTACACCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTACGTGTTAGCCAAGCTGGTCCCTCTGTCGTCGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1371 0.4143 MDREDYLRKCSNMKCQRVQVDESYVPALQDGVMEVEHLLAEPRNNLAPQDGSLNSHTTLNSKDDLELEVLDGLLDDVEIDDLEGADGFPGACEEYFFDFGFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAHSESKNDSLDETVTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNYRHLAGGILTCKKDKGPVEKGQPAALREKRFRKPTQRYIEEFSNARSKEKVPPAGTKTKHSSNSSCNVLHIRIKSSKRSPSEKSSNENSEVMLPELQVSKGHQKKEKLQYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEVEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQAGPSVVADSPPVSLSKRNVRRKFT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium479g00010 456 MobiDBLite consensus disorder prediction 232 328 - -
Vium479g00010 456 ProSiteProfiles Myb-like domain profile. 324 379 IPR001005 -
Vium479g00010 456 MobiDBLite consensus disorder prediction 421 456 - -
Vium479g00010 456 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 430 - -
Vium479g00010 456 SMART sant 328 381 IPR001005 -
Vium479g00010 456 SUPERFAMILY Homeodomain-like 331 399 IPR009057 -
Vium479g00010 456 CDD SANT_TRF 330 380 - -
Vium479g00010 456 Pfam Myb-like DNA-binding domain 331 379 IPR001005 -
Vium479g00010 456 MobiDBLite consensus disorder prediction 247 265 - -
Vium479g00010 456 Gene3D - 317 430 - -
Vium479g00010 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 323 383 IPR017930 -
Vium479g00010 456 MobiDBLite consensus disorder prediction 290 305 - -
Vium479g00010 456 MobiDBLite consensus disorder prediction 232 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium479g00010 Vium-Chr479 116791 123900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium479g00010 328 391 Single Myb Histone (SMH) Gene Family AT1G17520 38.806 2.02e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium479g00010 Myb_DNA-binding 9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium479g00010 - - gmx:100810255 725.702