Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium479g00008 ATGAATGAGCGAGGATGCTATTCAACACAACATGAGATGGATCGTGAAGACTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGGAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGAATTCTCATACAACTTTGAACAGCAAGGATGATTTGGAACTGGAGGTACTTGATGGATTGCTAGATGATGTGGAAATTGATGATCTTGAAGGAGCTGATGGTTTCCCGGGTGCATGTGAAGAATATTTTTTTGATTTTGGATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCGGAAAGTCATTCGTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCTATTGCACACTCTGAAAGCAAAAATGATTCTCTGGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTGCAAGAGTTGGATAACTATCGTCATTTAGCTGGTGGTATACTGACTTGTAAGAAGGACAAGGGTCCTGTCGAGAAAGGCCAACCTGCTGCACTTAGAGAGAAAAGGTTCCGGAAGCCTACGCAAAGGTATATTGAAGAATTTTCAAATGCGAGGTCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTAACTCATCATGTAATGTACTTCATATAAGAATTAAATCATCGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTAGCAAAGGGCATCAGAAGAAAGAGAAACTTCAGTATGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGTTGAGCAAAATGACGAGTTAGCCCTGCGTCCCTTACCATTTAATGTGGTACACCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTACGTGTTAGCCAAGCTGGTCCCTCTGTCGTCGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1407 0.4144 MNERGCYSTQHEMDREDYLRKCSNMKCQRVQVDESYVPALQDGVMEVEHLLAEPRNNLAPQDGSLNSHTTLNSKDDLELEVLDGLLDDVEIDDLEGADGFPGACEEYFFDFGFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAHSESKNDSLDETVTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNYRHLAGGILTCKKDKGPVEKGQPAALREKRFRKPTQRYIEEFSNARSKEKVPPAGTKTKHSSNSSCNVLHIRIKSSKRSPSEKSSNENSEVMLPELQVSKGHQKKEKLQYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEVEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQAGPSVVADSPPVSLSKRNVRRKFT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium479g00008 468 MobiDBLite consensus disorder prediction 244 340 - -
Vium479g00008 468 Gene3D - 329 442 - -
Vium479g00008 468 SMART sant 340 393 IPR001005 -
Vium479g00008 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 335 395 IPR017930 -
Vium479g00008 468 CDD SANT_TRF 342 392 - -
Vium479g00008 468 MobiDBLite consensus disorder prediction 433 455 - -
Vium479g00008 468 MobiDBLite consensus disorder prediction 302 317 - -
Vium479g00008 468 MobiDBLite consensus disorder prediction 259 277 - -
Vium479g00008 468 MobiDBLite consensus disorder prediction 244 258 - -
Vium479g00008 468 SUPERFAMILY Homeodomain-like 343 411 IPR009057 -
Vium479g00008 468 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 15 442 - -
Vium479g00008 468 ProSiteProfiles Myb-like domain profile. 336 391 IPR001005 -
Vium479g00008 468 Pfam Myb-like DNA-binding domain 343 391 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium479g00008 Vium-Chr479 116791 123900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium479g00008 340 403 Single Myb Histone (SMH) Gene Family AT1G17520 38.806 2.17e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium479g00008 Myb_DNA-binding 9.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium479g00008 - - gmx:100810255 730.709