Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium479g00007 ATGAGCGAGGTAAAACTTCAATTTTTATTGCAGAACAATGGATGCTATTCAACACAACATGAGATGGATCGTGAAGACTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGGAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGAATTCTCATACAACTTTGAACAGCAAGGATGATTTGGAACTGGAGGTACTTGATGGATTGCTAGATGATGTGGAAATTGATGATCTTGAAGGAGCTGATGGTTTCCCGGGTGCATGTGAAGAATATTTTTTTGATTTTGGATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCGGAAAGTCATTCGTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCTATTGCACACTCTGAAAGCAAAAATGATTCTCTGGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTGCAAGAGTTGGATAACTATCGTCATTTAGCTGGTGGTATACTGACTTGTAAGAAGGACAAGGGTCCTGTCGAGAAAGGCCAACCTGCTGCACTTAGAGAGAAAAGGTTCCGGAAGCCTACGCAAAGGTATATTGAAGAATTTTCAAATGCGAGGTCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTAACTCATCATGTAATGTACTTCATATAAGAATTAAATCATCGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTAGCAAAGGGCATCAGAAGAAAGAGAAACTTCAGTATGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGTTGAGCAAAATGACGAGTTAGCCCTGCGTCCCTTACCATTTAATGTGGTACACCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTACGTGTTAGCCAAGCTGGTCCCTCTGTCGTCGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1434 0.4114 MSEVKLQFLLQNNGCYSTQHEMDREDYLRKCSNMKCQRVQVDESYVPALQDGVMEVEHLLAEPRNNLAPQDGSLNSHTTLNSKDDLELEVLDGLLDDVEIDDLEGADGFPGACEEYFFDFGFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAHSESKNDSLDETVTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNYRHLAGGILTCKKDKGPVEKGQPAALREKRFRKPTQRYIEEFSNARSKEKVPPAGTKTKHSSNSSCNVLHIRIKSSKRSPSEKSSNENSEVMLPELQVSKGHQKKEKLQYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEVEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQAGPSVVADSPPVSLSKRNVRRKFT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium479g00007 477 Gene3D - 338 451 - -
Vium479g00007 477 Pfam Myb-like DNA-binding domain 352 400 IPR001005 -
Vium479g00007 477 CDD SANT_TRF 351 401 - -
Vium479g00007 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 344 404 IPR017930 -
Vium479g00007 477 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 24 451 - -
Vium479g00007 477 MobiDBLite consensus disorder prediction 268 286 - -
Vium479g00007 477 SUPERFAMILY Homeodomain-like 352 420 IPR009057 -
Vium479g00007 477 SMART sant 349 402 IPR001005 -
Vium479g00007 477 MobiDBLite consensus disorder prediction 253 267 - -
Vium479g00007 477 ProSiteProfiles Myb-like domain profile. 345 400 IPR001005 -
Vium479g00007 477 MobiDBLite consensus disorder prediction 311 326 - -
Vium479g00007 477 MobiDBLite consensus disorder prediction 442 464 - -
Vium479g00007 477 MobiDBLite consensus disorder prediction 253 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium479g00007 Vium-Chr479 116791 123900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium479g00007 349 412 Single Myb Histone (SMH) Gene Family AT1G17520 38.806 2.20e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium479g00007 Myb_DNA-binding 9.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium479g00007 - - gmx:100810255 730.709