Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium479g00006 ATGAGCGAGGTAAAACTTCAATTTTTATTGCAGAACAATGGATGCTATTCAACACAACATGAGATGGATCGTGAAGACTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGGAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGAATTCTCATACAACTTTGAACAGCAAGGATGATTTGGAACTGGAGGTACTTGATGGATTGCTAGATGATGTGGAAATTGATGATCTTGAAGGAGCTGATGGTTTCCCGGGTGCATGTGAAGAATATTTTTTTGATTTTGGATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCGGAAAGTCATTCGTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCTATTGCACACTCTGAAAGCAAAAATGATTCTCTGGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTGCAAGAGTTGGATAACTATCGTCATTTAGCTGGTGGTATACTGACTTGTAAGAAGGACAAGGGTCCTGTCGAGAAAGGCCAACCTGCTGCACTTAGAGAGAAAAGGTTCCGGAAGCCTACGCAAAGGTATATTGAAGAATTTTCAAATGCGAGGTCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTAACTCATCATGTAATGTACTTCATATAAGAATTAAATCATCGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTAGCAAAGGGCATCAGAAGAAAGAGTATGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGTTGAGCAAAATGACGAGTTAGCCCTGCGTCCCTTACCATTTAATGTGGTACACCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTACGTGTTAGCCAAGCTGGTCCCTCTGTCGTCGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1425 0.4119 MSEVKLQFLLQNNGCYSTQHEMDREDYLRKCSNMKCQRVQVDESYVPALQDGVMEVEHLLAEPRNNLAPQDGSLNSHTTLNSKDDLELEVLDGLLDDVEIDDLEGADGFPGACEEYFFDFGFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAHSESKNDSLDETVTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNYRHLAGGILTCKKDKGPVEKGQPAALREKRFRKPTQRYIEEFSNARSKEKVPPAGTKTKHSSNSSCNVLHIRIKSSKRSPSEKSSNENSEVMLPELQVSKGHQKKEYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEVEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQAGPSVVADSPPVSLSKRNVRRKFT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium479g00006 474 MobiDBLite consensus disorder prediction 253 346 - -
Vium479g00006 474 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 24 448 - -
Vium479g00006 474 Gene3D - 335 448 - -
Vium479g00006 474 Pfam Myb-like DNA-binding domain 349 397 IPR001005 -
Vium479g00006 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 341 401 IPR017930 -
Vium479g00006 474 SMART sant 346 399 IPR001005 -
Vium479g00006 474 MobiDBLite consensus disorder prediction 439 474 - -
Vium479g00006 474 SUPERFAMILY Homeodomain-like 349 417 IPR009057 -
Vium479g00006 474 MobiDBLite consensus disorder prediction 268 286 - -
Vium479g00006 474 ProSiteProfiles Myb-like domain profile. 342 397 IPR001005 -
Vium479g00006 474 CDD SANT_TRF 348 398 - -
Vium479g00006 474 MobiDBLite consensus disorder prediction 253 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium479g00006 Vium-Chr479 116790 123900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium479g00006 346 409 Single Myb Histone (SMH) Gene Family AT1G17520 38.806 1.99e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium479g00006 Myb_DNA-binding 9.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium479g00006 - - gmx:100810255 714.531