Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium479g00004 ATGATGGAAGCTAATTACGTATCGCGAGTGTTTCGCGGTGTTCGTTTTGTTCTCCGTGGCTTCAATCCCGCCGCCGAAAGCCAGATCCGGTTTAAGCTTGAGGATGGCGGTGGACTTGAAGCAGGGCAGTACGGTGGGAGTTGCACGCATGTCATTGTCGATAAGATTGCTTATGACGATCCTCTGTGTGTTGCTGCTAGAAAGGATCGGAAGACGCTCGTCACTGCACTCTGGGTTGATCACAGTGCTGATATCGGAATGCCCATTGATGCTTCTTCGGTTATGTATAGACCTCCTAAAGACTTGGATGGAATACCAGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACCATGGTCGGCCTGATGGGTGCGAAGTTTTCTAAACCATTGGTAGCAAACAAGGTTACTCATCTCATATGCTATAAATTTGAAGGAGAGAAGTATCTGCTTGCCAAGAGATTGGGCACAATAAAGCTAGTCAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCTGAAGACAAATATAGCAAGAGTGGTTACGAACTAGAAATGACGGAGGAAGAGGCCAAGGATTCTGAGGAAGAGGGTGAAGATTCTAAGCTGGGACAATCAGGTGGGAGAAATATACAACAAAGCTCCCTTGGTTCAAAATTTGGGCATGCTGGAACTCATGGATTGTTGAAATCAGTAAAAGAGGCATCGAGCAACTTACCAGATTCTACTGGTCCACGGGTTTTGCCAAATTTCAATAATGGTGAAGACTCTTTAACCATTCCCGGAAACAAGAGAAAATCTGATCAAGCCTCTAGCTTTTATAATGTTGATGACTCAAGGATACGCTATCAGACTCCTGATGTTTCTAAATTACCTGACAAATATACAAACACCACTGAGTCTAAGAATGCTGATTTTCCAAAGGCACTTGGCTGCCAGGACCCTGGCAATACGGCAAATACTAAATCATCTGTTCAGCAGTCCGGTCTGCATGGTAACACTACGGAGTCTAAGAAGTTGGTAAGTGAATTGACATCAACATCTGCAAGTGCAGCTGGAGTTGCACATTCAAATGAAAAGCTTAGAATCACAAGTTATTCTATAGAGAACCAAAGTGAATTTTCTGTCCCAAGGATATTAGACGGAAGCTCCGGCATAGAAGGCAACAAATGTGAAAACAGTAAGATTGACGAGGCAATTGGGTTTATGAAATCTACCAGTTTTGAAATTTCTGGGAGAGGAAATGATTTTACTAAAGAGGATGAACCAATTAGTTTATTGTCTCAAAAGAGGATAAATGAACCTTCTTTTACGAAATTAAAATCAAGAAAGGTGTCTTCTGATGCAAAAGTCTCCACCCAATCAGCAAATGGTAAACCTCAAGGATTAAAAGTGACGTCTCAGGTTGATGAGCCACCCAAAGCCGGTCCTAACACCAACTCACTGGCATTTGATGAGCATTTCTCAAGAAATCCCAGCCCAGAATCTGCACAGTGGGATAGTGTCTATCAGAATAGTCCACAAACAGCTATTCGGAGCTTAAGTGAGTCTAAAATTAGTGGCAAGCCTGATGTCACAAGTTCTGGAATGCGAGAAGTTGGTGGTAATGAAATCGGGCTGCATATTACCAAAAGTCTTGATTCTTCATCAAAGGGAAACAAAATCTCACATAATGTGGAATCCGGTGGTTGTACTAACTTGGATTTAAGCAATGAAGAATGTAATAAACTGGTTAGAAAATCACCCACAAAGAAGTCAGTTGTCAAGGGAATTTCGGGTTCTAAACCTAGAGTAGGTGCCACTGCTACACATAAAAGATCACTTTCCTTGAATAAAACTAACCTTGGTGAAGGTGTAGCTTTATGCAGCGAAAGCGAAGAGATTTGTGATGCGAAGATGCATCAGGGTTGTCACCAAAACCGGGATATTAACAAAACGATGGAGCAAGATGCAGTATGTAAAAATGCAAATGATGCTTCTGACAGAGCTGAGTTCTTGACGGATGAAACAGAGGCTCCAGATGATAAATATGAATTTGAGTTTGGAATGGCACTAAATAAAGAATCAGTCCATGCTTCGGAAAAGCCGAATAGAGCAACAAAAGAGAAGTCAGAAGCAATTTGCCGTGCAACAAAATGTGAAGAGGCAAATCCTCCTAAGAGAGGCACAAATAAAGCAGAAATACAGAAAACGTCTTCGCTGTTAGTAAAGACTCAAGCAAGAGAATGTGCTGCTGGTAAAGCCAATGCCACAGTTAATAAATACGTAGGCGATGCTGGTGACAGAACTGAGACTTTGGATGATGAAACCGAAGATCCAGATGACAAACTTAAAAATGTGTTAGGAGTGGCACCTGAAGAAGAATTGGTTTATCCTTCCAAAAAACGAGATAAATCCACTAAGGTTCACCCTTCAAGAAAACAAGATAAATCTACAGAAGAGAAGCCAGAAGCAATTTGTCCCGCGCCAAAATGTGACGAGGCAATGCCTCCTCAAGGTGTCACAAATAAAACCGAAAAACAGAAGCCATCTTCACTGGTAGTAAGGAAACGTCCTGCTGGTAAAGCCAAGGCCACAGTTGCCAAGCATTTATCGAAACCTAAAGTTGTAGTATCTACGGAGAAGATTCCTAATGAAACGGGGCACGAGGCAGAGATAGAAACTGTGGAAGAAATGCCCTCTTCTGCTGATAAACGTGACAAGTCGGCCTTAGCAAGAAATAAGTCAGAGACTTTAGCTGAAGACGAGAAGGAGAATAGACCAATTGATTTAATGCAGGATCCTGTGAAGGGTAGAAGCAATGGCAAATCAACCAATAAATCTAATGTAAGGCGAACAAATATCAAGTCGACTAAAGTGGGGCCCATTTCATCTATATCAGAATCTAACACGAGAGTAAAAACTGAAGCGGCATATTTTATATTAAGCGGTCACCGTCTACAGAGAAAAGAGTTTGAGCAAGTAATCAAGCGCTTAAGTGGAAGGGTTTGCGGGGTTTCTTCTCACAAGTGGTCATATCAGGCGACACACTTCATAGCTCCAGACCCCTTACGCAGGACTGAGAAATTCTTTGCTGCGGCTGCATCAGGAAGGTGGATTCTGAATACGGATTACCTAACTGCCAGCAGTCAGGAAGGAAGACTCTTGGCGGAGGAGCCGTATGAGTGGCACAGGAATGGTCTCAGTGAGGATGGAGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTAGTTAAAGAAAAAACAGGTCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGTGATTGCATTGCTCCGCCTTTGGATACTCTTAAACGTGTCATCAAAGCTGGCGATGGAACAATATTAGCCACTTCTCCTCCTTATACAAAATTCATTGGGACCGGAGTCGACTATGCTGTAGTTAGCCCTGGCATGCCACATGTTGATATCTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTCGGGAAGCATGTGTTATACGGCTCTCATGTTTGGGCAGAAAAATCCTTTGATAAACTTAAAAGCAAAGCAGAAGAGATTGTTGCTCCTGAGGATTTGAGTAGTGATGATGATGATGATGATGATAATGATAATGATAATGATATAATTTGCCAAGTGTGTGGATCCCGCGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGGTGTGGAGTGGGTACCCACATCGATTGCTGCGATCCTCCGCTAACAGACGTCCCTGAGGACGACTGGTTTTGTTCAAAATGCAGTACCACCCGAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAATGTTTTATCATAA 3927 0.4278 MMEANYVSRVFRGVRFVLRGFNPAAESQIRFKLEDGGGLEAGQYGGSCTHVIVDKIAYDDPLCVAARKDRKTLVTALWVDHSADIGMPIDASSVMYRPPKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAKFSKPLVANKVTHLICYKFEGEKYLLAKRLGTIKLVNHRWLEDCLKEWVLLPEDKYSKSGYELEMTEEEAKDSEEEGEDSKLGQSGGRNIQQSSLGSKFGHAGTHGLLKSVKEASSNLPDSTGPRVLPNFNNGEDSLTIPGNKRKSDQASSFYNVDDSRIRYQTPDVSKLPDKYTNTTESKNADFPKALGCQDPGNTANTKSSVQQSGLHGNTTESKKLVSELTSTSASAAGVAHSNEKLRITSYSIENQSEFSVPRILDGSSGIEGNKCENSKIDEAIGFMKSTSFEISGRGNDFTKEDEPISLLSQKRINEPSFTKLKSRKVSSDAKVSTQSANGKPQGLKVTSQVDEPPKAGPNTNSLAFDEHFSRNPSPESAQWDSVYQNSPQTAIRSLSESKISGKPDVTSSGMREVGGNEIGLHITKSLDSSSKGNKISHNVESGGCTNLDLSNEECNKLVRKSPTKKSVVKGISGSKPRVGATATHKRSLSLNKTNLGEGVALCSESEEICDAKMHQGCHQNRDINKTMEQDAVCKNANDASDRAEFLTDETEAPDDKYEFEFGMALNKESVHASEKPNRATKEKSEAICRATKCEEANPPKRGTNKAEIQKTSSLLVKTQARECAAGKANATVNKYVGDAGDRTETLDDETEDPDDKLKNVLGVAPEEELVYPSKKRDKSTKVHPSRKQDKSTEEKPEAICPAPKCDEAMPPQGVTNKTEKQKPSSLVVRKRPAGKAKATVAKHLSKPKVVVSTEKIPNETGHEAEIETVEEMPSSADKRDKSALARNKSETLAEDEKENRPIDLMQDPVKGRSNGKSTNKSNVRRTNIKSTKVGPISSISESNTRVKTEAAYFILSGHRLQRKEFEQVIKRLSGRVCGVSSHKWSYQATHFIAPDPLRRTEKFFAAAASGRWILNTDYLTASSQEGRLLAEEPYEWHRNGLSEDGAINMEAPRKWRLVKEKTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTKFIGTGVDYAVVSPGMPHVDIWVQEFLKHEIPCVVADYLVEYVCKPGFSLGKHVLYGSHVWAEKSFDKLKSKAEEIVAPEDLSSDDDDDDDNDNDNDIICQVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLTDVPEDDWFCSKCSTTRNSSNNPTKRKKNVLS 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium479g00004 1308 CDD BRCT_TopBP1_rpt7 986 1060 - -
Vium479g00004 1308 Gene3D BRCT domain 979 1096 IPR036420 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 803 835 - -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 895 939 - -
Vium479g00004 1308 Gene3D BRCT domain 1097 1196 IPR036420 -
Vium479g00004 1308 Gene3D BRCT domain 2 94 IPR036420 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 304 318 - -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 452 547 - -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 248 293 - -
Vium479g00004 1308 SUPERFAMILY BRCT domain 989 1073 IPR036420 -
Vium479g00004 1308 ProSiteProfiles Zinc finger PHD-type profile. 1236 1292 IPR019787 -
Vium479g00004 1308 SUPERFAMILY FYVE/PHD zinc finger 1225 1294 IPR011011 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 197 231 - -
Vium479g00004 1308 SUPERFAMILY BRCT domain 8 93 IPR036420 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 945 960 - -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 248 351 - -
Vium479g00004 1308 ProSiteProfiles BRCT domain profile. 987 1070 IPR001357 -
Vium479g00004 1308 SUPERFAMILY BRCT domain 106 192 IPR036420 -
Vium479g00004 1308 Pfam BRCA1 C Terminus (BRCT) domain 990 1055 IPR001357 -
Vium479g00004 1308 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 461 478 - -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 895 960 - -
Vium479g00004 1308 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 6 1304 IPR044254 -
Vium479g00004 1308 Pfam twin BRCT domain 111 175 IPR001357 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 496 538 - -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 328 351 - -
Vium479g00004 1308 Gene3D BRCT domain 100 221 IPR036420 -
Vium479g00004 1308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1222 1307 IPR013083 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 774 875 - -
Vium479g00004 1308 SMART BRCT_7 8 86 IPR001357 -
Vium479g00004 1308 SMART BRCT_7 1098 1185 IPR001357 -
Vium479g00004 1308 SMART BRCT_7 978 1060 IPR001357 -
Vium479g00004 1308 SMART BRCT_7 99 183 IPR001357 -
Vium479g00004 1308 MobiDBLite consensus disorder prediction 599 619 - -
Vium479g00004 1308 Pfam PHD-finger 1238 1290 IPR019787 -
Vium479g00004 1308 SMART PHD_3 1238 1290 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium479g00004 Vium-Chr479 80026 86348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium479g00004 129 217 Core DNA Replication Machinery Family AT4G02110 71.910 8.87e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium479g00004 BRCT 1.3e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium479g00004 K10728 - gmx:100799144 1827.76