Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4799g00001 ATGCTAGATTGGGGAACAAGAGTCAGAATAATTGATGGAATTGCCCAAGGAATTCTTTATCTTCATCAGTATTCCAGGTTCAGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTGGACAGCCATATGAATCCCAAAATATCAGATTTTGGATTGGCAAAAATATTTGGTGATAATGAGCTTCAAGCAAATACAAACCGAATAGTTGGAACATATGGTTATATGGCTCCTGAATATGCTATGGAAGGACTCTTCTCAGTAAAATCGGACGTGTTTAGTTTTGGGGTCCTTTTGTTGGAGATTGTAAGTGGCAAGAAGAATACTGGCTTTTATCAAACGAATTCCTTCAATCTTCTTGGATATGCTTGGGATCTTTGGACAAGAAATTCAGGACTGGATCTAATGGACAATGCATTAGATGACAGTGATACTTTAAGTAATAACAGTCTGCATACTGTGCCAAGGTATGTGAACATAGGACTTCTTTGCGTTCAAGAAAGTCCAAAAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGAAATGACACTGTGCTCCTTCCTTCTCCTAAACCACCTGCATTTCTAAAGGTAAGAGGTGATTATAGTTCAACATTGCCCTCAACATTTTCAGTTAATGTTATCACAAATACAACTCTGGAAGCAAGATGA 681 0.3774 MLDWGTRVRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDSHMNPKISDFGLAKIFGDNELQANTNRIVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIVSGKKNTGFYQTNSFNLLGYAWDLWTRNSGLDLMDNALDDSDTLSNNSLHTVPRYVNIGLLCVQESPKDRPTMSDVVSMIGNDTVLLPSPKPPAFLKVRGDYSSTLPSTFSVNVITNTTLEAR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4799g00001 226 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 191 - -
Vium4799g00001 226 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4799g00001 226 SMART serkin_6 1 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4799g00001 226 Pfam Domain of unknown function (DUF3403) 185 226 IPR021820 GO:0004674
Vium4799g00001 226 Pfam Protein tyrosine and serine/threonine kinase 6 182 IPR001245 GO:0004672|GO:0006468
Vium4799g00001 226 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 199 - -
Vium4799g00001 226 SUPERFAMILY Protein kinase-like (PK-like) 2 215 IPR011009 -
Vium4799g00001 226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
Vium4799g00001 226 Gene3D Transferase(Phosphotransferase) domain 1 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4799g00001 Vium-Chr4799 10949 12161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4799g00001 2 198 Receptor kinase-like Gene Family AT4G23230 58.081 2.27e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4799g00001 PK_Tyr_Ser-Thr 6.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4799g00001 - - gmx:100811148 400.208