Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4792g00003 ATGGACAGCACCGAAGACTCATCAACCAGTTCACAACAACAACCAAACCTCCCACCCGGCTTTCGGTTCCACCCCACAGACGAAGAGCTCGTGGTTCACTACCTCAAGAAGAAAGTTGATTCTGTTCCTCTCCCTGTTTCCATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGGGAGGAAGAGTGGTACTTTTTCAGTCCAAGAGATAGGAAGTACCCAAATGGCGCGAGGCCAAACAGGGCTGCAACTTCAGGGTACTGGAAGGCGACGGGGACAGATAAACCCATATGCAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTACGGCGGAAAGCCACCAAAAGGGGTGAAAACCGATTGGATCATGCATGAGTATCGTCTCGCTGAAACCAAGCCTAACAACAGACCACCTGGCTGTGACTTGGGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGCAACACACAAAGGTCAGCCATGGAGCAGGAGAGGGATGATTCCATGGATGACATGATTGGAGAAGTACCTTCTTCCATGAACGTGGGCCACATGAATGCGAGATTTCACCTTTCAAAGATGTGTACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGCAATGGTGTGAATGGGATGAGCACTACTGCCACAAGTGCCATGCCATCTCAGTTTGGCACTTCAGCCTCCAAAAGAACACTCTCAACACTCTATAACTGGAACGATGACAGTGATGAAAAACACTTCAATTTGGACACTAATGGTAATGTCAGTGTTGTGAGGACTGAAGAGAACAATGCTTCTCCTGGCTCCTTTGCTACTCTGCTTAACCAGCTCCCACAATACCAAATACAAGGGACCAATTGGTACGGCTAA 972 0.4774 MDSTEDSSTSSQQQPNLPPGFRFHPTDEELVVHYLKKKVDSVPLPVSIIADVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRLAETKPNNRPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSAMEQERDDSMDDMIGEVPSSMNVGHMNARFHLSKMCTSYSGALLENDRNTLEGVVIGNGVNGMSTTATSAMPSQFGTSASKRTLSTLYNWNDDSDEKHFNLDTNGNVSVVRTEENNASPGSFATLLNQLPQYQIQGTNWYG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4792g00003 323 PANTHER NAC TRANSCRIPTION FACTOR 56 17 218 - -
Vium4792g00003 323 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Vium4792g00003 323 MobiDBLite consensus disorder prediction 1 22 - -
Vium4792g00003 323 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Vium4792g00003 323 FunFam NAC transcription factor 56 26 181 - -
Vium4792g00003 323 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Vium4792g00003 323 Gene3D NAC domain 26 181 IPR036093 GO:0003677|GO:0006355
Vium4792g00003 323 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4792g00003 Vium-Chr4792 56136 58484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4792g00003 1 322 NAC Transcription Factor Family AT3G15510 51.771 1.61e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4792g00003 NAM 8.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4792g00003 - - gmx:100812933 553.132