Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4792g00001 ATGGGATGGATGTCACATGGTTTGGCTTTTGCTCTCGTTGCCGTGTTCTTCTGTCACTTCAGTTGCTTCGTTAGCTTTTCTCAAGCTCAATCTGCAAACGCCACCACTGACCCTTCTGAAGCAAGAGTTTTAAATTCAATCTTCAGTACATGGGGTATCTCTGCACTCACAAATGTGTGGAATATAAGCGGTGAACTGTGCAGTGGAAATGCCATTGATAGTACTTCCACCCCTGAAAGTTACAATCCATTCATCAGATGTGACTGTTCATTTGACAATCGAACTACTTGCCACATCACAGCATTGAGGGTCTATGCACTGAACGTGTTTGGTGAAATTCCGGAAGAACTATGGACTCTCACCTATCTCACCAATTTAAATATTGGGCAAAATTACTTGACGGGTTCTCTGCCTCCAGCTATTGGAAATCTAACTCGTATGCAGTACTTGAGCCTTGGAATCAATAATTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACAGAGTTAATAATACTGAGTATTTCGTCAAACAATTTCTCAGGATCTCTCCCATCCGAACTTGGGAAACTCACAAAGTTAGAACAACTCTACATTGATAGTTCTGGAAATAGTGGTCCAATTCCATCCTCATTTGCAGACCTTACGAGTTTGGCAACAGTATGGGCTTCAGACGTGGAACTCACAGGCAATATACCAAACTTCATAGGGAATTGGACTAGGCTTCAAGTCTTGAGGCTTCAAGGCAATTCTTTTAATGGCTCAATACCCTCGTCACTTTCCAACTTGACTTCTTTAACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTCTACAGAATATGAAATCTTTGACTACCTTAGAATTGAGGAATAACAATATTTCTGGTTCAATTCCGTCCTTCATTGGAGAGTTTCACAATTTGACCCAACTGGATTTAAGTTTCAATAGCATCGAAGGACAAATTCCGGGTTCAATTTTCAATTTGAGCTCGCTCAATACCTTGTTTCTTGGAAATAATAAACTAAATGGCACCCTTCCAACACAGAAACGTTCATCACTTCAGAATATAGACTTGTCATACAATGATCTATCAGGAAGCCTCCCCTCTTGGGTAAACGAAGCAAATTTACAACTGAATTTAGTTGCTAACAACTTGTCGATAGATGATGGTTCAGATTCCAGTGGCTTGCCATTTGGGCTCAACTGTCTCCAGAAAAACTTTCCTTGCAATCGAGGTGTTGGAAGATATTCTGACTTTGCTATCAAGTGTGGCGGACCCCAAATTACGTCCACAGAAGGAATCACATATGAAAGGGAGAATGAGACACTTGGTTCTGCTACATACTTTGTTACTGATACAAGTAGATGGGCTGTTAGTAATGTTGGATTGTTTACGGGCAATAGTAATCCAGAATACACAAAATTTGTGTCTAATCAATTCACTAACACTATGAATACGGAGCTCTTCCAAACAGCACGGGTCTCTCCTTCATCATTAAGATATTATGGCTTGGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCTGGATTCTGCTGGAAGATGGGAAAGTCTTGGGAGACGAGTCTTTGATATATATATCCAGGGGAATCTTGTTTTGAAAGATTTCGACATAAAAAAGGAAGCTGGGGGCATCTCATTCAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACTGAAAACTATATTGACATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATCCCAGATTTTATACCTACTGTCAGTAACGAACCTCCAAGCAATTCAAATAATAGAACCGGCCTTATTGTTGGAATTGTTGTTGGAATTGGAGTTGTAAGCTTCCTATCAGTTTTTGTGATTTTCTGTATCATTCGGAGAAGAAAACGTCAGCATGAAGATGAAGAGCTTTTAGGAATTGATACAAAGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACAAATGACTTTAATGTCGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTAGCCTCTCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCGGCTGTACAACATCGTAATCTGGTTAAACTATATGGATGTTGCATTGAGGGAAATAAGAAACTTCTTGTGTACGAGTACCTAGAGAACAAGAGTCTTGATCAAGGATTATTTGGAAATTCTTTAACCCTCAATTGGTCCACACGCTATGATATTTGCACGGGTATTGCCAGAGGTTTAGCATATTTACACGAAGAGTCTCGTCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTTTGCTTGACTACGAGCTTGTACCCAAAATATCTGATTTTGGATTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACCCGTGTGGCTGGAACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATATATTTTCATTTGGTGTTGTTGCTCTTGAGTTAGTAAGTGGGAGACCAAATGCTGATTCAAGTTTGGAAGGAGACAAGGTCTATCTTCTTGAATGGGCTTGGCAGCTTCATGAAAGCAACCTCATAATGGATCTGGTGGACCCTAGACTTTCAGAATTCAATGAGGAAGAAGTAAAACGTATTGTGGGAATAGCACTTCTGTGCACTCAGACATCACCATCATTAAGGCCATCGATGTCACGAGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAACACTGTTACTTCAAAGCCTGGATACCTTAGTGACTGGAAATTTGATGATGTTAGCAGCTTCATGACTGAAAACGCGGTCAAAGGATTCAATACAAGTTACCAGTCGTCGGGAAGTACCAGCATGGTGGGTGGTGCAGACTATTCACCCGTAAGTGTTTCTAAACCGATCCTTAAGGATGCTCTTAATGAGGGTAGGTAA 3099 0.4079 MGWMSHGLAFALVAVFFCHFSCFVSFSQAQSANATTDPSEARVLNSIFSTWGISALTNVWNISGELCSGNAIDSTSTPESYNPFIRCDCSFDNRTTCHITALRVYALNVFGEIPEELWTLTYLTNLNIGQNYLTGSLPPAIGNLTRMQYLSLGINNLSGELPKELGNLTELIILSISSNNFSGSLPSELGKLTKLEQLYIDSSGNSGPIPSSFADLTSLATVWASDVELTGNIPNFIGNWTRLQVLRLQGNSFNGSIPSSLSNLTSLTELRISGLSNGSSSLEFLQNMKSLTTLELRNNNISGSIPSFIGEFHNLTQLDLSFNSIEGQIPGSIFNLSSLNTLFLGNNKLNGTLPTQKRSSLQNIDLSYNDLSGSLPSWVNEANLQLNLVANNLSIDDGSDSSGLPFGLNCLQKNFPCNRGVGRYSDFAIKCGGPQITSTEGITYERENETLGSATYFVTDTSRWAVSNVGLFTGNSNPEYTKFVSNQFTNTMNTELFQTARVSPSSLRYYGLGLENGFYNITLQFAETAILDSAGRWESLGRRVFDIYIQGNLVLKDFDIKKEAGGISFRAVQRQFRFEVTENYIDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPTVSNEPPSNSNNRTGLIVGIVVGIGVVSFLSVFVIFCIIRRRKRQHEDEELLGIDTKPYTFSYSELKNATNDFNVENKLGEGGFGPVYKGTLNDGRVIAVKQLSVASHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFGNSLTLNWSTRYDICTGIARGLAYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALELVSGRPNADSSLEGDKVYLLEWAWQLHESNLIMDLVDPRLSEFNEEEVKRIVGIALLCTQTSPSLRPSMSRVVAMLSGDIEVNTVTSKPGYLSDWKFDDVSSFMTENAVKGFNTSYQSSGSTSMVGGADYSPVSVSKPILKDALNEGR 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4792g00001 1032 Pfam Leucine rich repeat 290 349 IPR001611 GO:0005515
Vium4792g00001 1032 SUPERFAMILY L domain-like 96 378 - -
Vium4792g00001 1032 FunFam Leucine-rich repeat transmembrane protein kinase 38 277 - -
Vium4792g00001 1032 CDD STKc_IRAK 699 960 - -
Vium4792g00001 1032 ProSiteProfiles Protein kinase domain profile. 693 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4792g00001 1032 Gene3D Phosphorylase Kinase; domain 1 655 768 - -
Vium4792g00001 1032 FunFam Leucine-rich repeat receptor-like protein kinase 424 616 - -
Vium4792g00001 1032 Gene3D Ribonuclease Inhibitor 37 277 IPR032675 -
Vium4792g00001 1032 FunFam Putative LRR receptor-like serine/threonine-protein kinase 278 401 - -
Vium4792g00001 1032 Gene3D Transferase(Phosphotransferase) domain 1 769 972 - -
Vium4792g00001 1032 FunFam Putative LRR receptor-like serine/threonine-protein kinase 769 972 - -
Vium4792g00001 1032 FunFam Leucine-rich repeat receptor-like protein kinase 662 768 - -
Vium4792g00001 1032 Pfam Malectin domain 426 612 IPR021720 -
Vium4792g00001 1032 Gene3D Ribonuclease Inhibitor 278 398 IPR032675 -
Vium4792g00001 1032 Gene3D - 426 616 - -
Vium4792g00001 1032 SUPERFAMILY Protein kinase-like (PK-like) 676 979 IPR011009 -
Vium4792g00001 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Vium4792g00001 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 998 - -
Vium4792g00001 1032 Pfam Protein tyrosine and serine/threonine kinase 695 960 IPR001245 GO:0004672|GO:0006468
Vium4792g00001 1032 SMART serkin_6 693 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4792g00001 Vium-Chr4792 4675 19225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4792g00001 99 248 Receptor kinase-like Gene Family AT1G56120 28.667 2.92e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4792g00001 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4792g00001 - - gmx:100798233 1639.4