Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium478g00001 ATGTTGTTGTATATTGGAGTATTTCTACCCATTGTTCTCTCCTTCATATTCTACCAGATAAGTAGGAGACACAAGAGAAATATACCCTTTGCAGTTTTAAAATTACCAATCATTGGTATGCTACATTATCTTCTCCTAAATTTGTCCAACATTCACGATTACGCAATCTTTGTTTTGAAACATTATGGAGGAACTCTGATGTTCGAAGGACCTTGGTTCACAAACATGAACTTTATTCTCACAGCCGATCCCACGAACGTGCACCACATCACCACCAAGAACTTTAGCAACTACGGGAAAGGGTCCAATTTCAGTGAAATATTTGACGTTTTTGGAGGTGGGATTATTAATTCTGATAATCTCCATGCATGGAAAAAAGAAAGGTCAGTACTTCATTCACTGTTTCAAAGGCAAAGCCTTAAGATCTTCCTTCGAAAAGCCATTCAGAAGAAGCTAGAGAATGACCTAGTTCCATTTCTTGATGATACATCCGAGGTTGGAGCTGAGGTAGACTTACAATTTGCCCTTCGGAGGTTCACATTCGACATTGCCTGCTCTTGTTTTCTTGGTTATGATCCTCACTCTCTTCCAAACAAGAATACTAAGCTTTCTCAACCTACTTATCAGAGAGCTTTAGTTGTGATCGAGGAGTCATTATTTCACAGGCACATCACACCGAGATGTTTGTGGAAGTTGCAGGAGTGGCTCCAGATTGGCCAAGAGAAGAAGTTCAAGGAGGCCAGAGAAATTTTTGATAAATTCTTGTATGAATGCGTTGCAGCCAAGCGTGAAGAGAAAAATAGATGCAATAGCACCAAAGAAGTAGATGATACTGATCATGACTTGCTGGGAGTGCTAATGGAAGAAGGAGATCAAAAGGGGAGAATAATGGATGACAAGTATCTTAGAGACACTGCATTTACCTTTGTCTCTGCTGGAAGTGGCACAATCAGTGCAAGTCTCAGTTGGTTCTTTTGGCTGGTTTCAACTCATCCACATGTGGAAGCTAAAATCCTTCAAGAGATCAAAGAAAATTGCATAAACCAAGATGGAACTTGGATTGCTTCTGGTGTTGAAGAGTTTGGTAAGTTAGCTTATCTCCATGGAGCTATATGTGAAGCACTGAGGCTTTTTCCTACTGTGCCCTATGATCACAAGTGTGCAATAAAATCTGATAGACTTCCTAGTGGACACCATGTTAGCCCAAATACCATGATATTGTACTCTTTGTATGCAATGGGAAGAATGGAAGAAATATGGGGACATGATTGCATGGAGTTTAAGCCTGAGAGATGGATTTCAGAGAGTGGAGAGATTATACAAATTCCATCTCACAAGTTCATAGCTTTCAATGCAGGCCCTAGAAGTTGTTTGGGTAAAGACATTACTTTCACTGAAATGAAGCTGGTTGCAGTTGCTATACTGTGGAGGTTTCAGATGAAGGTGGTGGATGGTCATCCTATAACACCAAGAGTCTCTGTGGTGCTTACCATTGAACAAGGCTTGAAGGTTAAGGTTACTAAGAGATGCACTTGA 1536 0.4043 MLLYIGVFLPIVLSFIFYQISRRHKRNIPFAVLKLPIIGMLHYLLLNLSNIHDYAIFVLKHYGGTLMFEGPWFTNMNFILTADPTNVHHITTKNFSNYGKGSNFSEIFDVFGGGIINSDNLHAWKKERSVLHSLFQRQSLKIFLRKAIQKKLENDLVPFLDDTSEVGAEVDLQFALRRFTFDIACSCFLGYDPHSLPNKNTKLSQPTYQRALVVIEESLFHRHITPRCLWKLQEWLQIGQEKKFKEAREIFDKFLYECVAAKREEKNRCNSTKEVDDTDHDLLGVLMEEGDQKGRIMDDKYLRDTAFTFVSAGSGTISASLSWFFWLVSTHPHVEAKILQEIKENCINQDGTWIASGVEEFGKLAYLHGAICEALRLFPTVPYDHKCAIKSDRLPSGHHVSPNTMILYSLYAMGRMEEIWGHDCMEFKPERWISESGEIIQIPSHKFIAFNAGPRSCLGKDITFTEMKLVAVAILWRFQMKVVDGHPITPRVSVVLTIEQGLKVKVTKRCT 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium478g00001 511 Gene3D Cytochrome P450 14 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 CDD CYP86A 67 502 - -
Vium478g00001 511 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 PANTHER CYTOCHROME P450 28 503 - -
Vium478g00001 511 Pfam Cytochrome P450 44 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 SUPERFAMILY Cytochrome P450 26 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium478g00001 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium478g00001 Vium-Chr478 3800 5551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium478g00001 2 509 Cytochrome P450 AT2G23180 41.973 1.12e-143 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium478g00001 - - vra:106753569 834.713