Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4789g00003 ATGGAGCTTCCCGATTCCACCGGCAGCGACTGCAACCTCAACGCGCTACGGTTGCAGCCACAACACAACAACCACCACCACGACGCTCGCTCAGGGCTCAGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCTAAAACCCTACCGGACTCCGCCACCGACATCGTCCGCGATTATGACGAGAACCCCGGGCCACCACCGGGAGCCCCCGTTGTCCTCCCCAGCAGTGGCCTCGCTTCTTGCACTGCTTGCTCCAAGCCCTGCCCCGCCGCCGCCGAGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGAGTGCGTCGCCTCTGGTGTGAAGAGAAAGCGGTGGTCGTTGGGAGTGAAGCAGCTTCTCGATAACAGCTCCTAG 420 0.631 MELPDSTGSDCNLNALRLQPQHNNHHHDARSGLRIDLNEIPSPSSLFAKTLPDSATDIVRDYDENPGPPPGAPVVLPSSGLASCTACSKPCPAAAESHHHLVVCDGCERGFHLACECVASGVKRKRWSLGVKQLLDNSS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4789g00003 139 PANTHER OS02G0192300 PROTEIN 20 136 - -
Vium4789g00003 139 SUPERFAMILY FYVE/PHD zinc finger 77 118 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4789g00003 Vium-Chr4789 75164 75583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4789g00003 27 135 C2H2 Transcription Factor Family AT3G01460 37.594 7.08e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4789g00003 K22768 - vum:124839220 283.878