Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4789g00002 ATGGGGAGGGGAAGAGTGGAACTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGCAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGCCAAAGAGCTTGAGCAGAGCAGCTATCGTGAGTACTTGAAGCTCAAAGGAAGATTTGAATCACTTCAGAGGACCCAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAGCTAGATTCGTCTCTCAAGCAAGTGAGGTCGACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTGACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGCGATCAAAGTATGCCGTATGGTACTCAGAATGCTCATTCTCAAGGCTTCTTCCAGCCCTTGGAGTGCAACCCTACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTGCCACAACTCAAGCTCAACAAGTTCAACAAGTGAACGGTTTTATTCCTGGATGGATGCTTTGA 756 0.4484 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGDQSMPYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTATTQAQQVQQVNGFIPGWML 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4789g00002 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vium4789g00002 251 Coils Coil 125 145 - -
Vium4789g00002 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Vium4789g00002 251 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vium4789g00002 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 FunFam MADS-box transcription factor 1 13 88 - -
Vium4789g00002 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium4789g00002 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium4789g00002 251 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium4789g00002 251 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4789g00002 Vium-Chr4789 17079 22214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4789g00002 1 251 MADS-box Gene Family AT5G15800 75.000 3.12e-125 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium4789g00002 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4789g00002 K09264 - gmx:100785322 451.825