Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4787g00013 ATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTTGAAAGTGATTCTTCTAGTGATAGTTCAGATGACAACAACCATGATGACGATAACTCTGATTTTATTGACGAGCCACATATGGCTACATATCCTTTGAAAAGTTCAGAGAACAGTGAAGAAGAAATTGAGGAAAATGCCTCTAAAACTCTGCAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGCCGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACAGATGATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGCGCTAAAAGTAAGCTGTNTTGCCGACACATGTCAGGTCGACAACAAGCAGAAGACGATTACGGAAGAGGCTAATAACAATTCCAAGGTCCCCAAGTTCTTCAACGCCTTCGAGTTCATCTCCTCCATGTCATCGGCCTTTGATCTCTCAAGCCTGTTCGAGACCAAGCGAAAGACGGCCGCAGTGTTCACTTCTAAGTGTTCTACAATGTCGATTATGGCCAAGATCGCCGCATTGGCCAGGGAAGCTCGTGATCACAGCGGAGGTGTTCGAGGTGGTGGCGGAGGTGGTTGTGGTAGAGTCGGATGGAGAGGGAGGGAGATGAGCTGA 747 0.4378 MEVLMDTTLDAQECDSKNVESDSSSDSSDDNNHDDDNSDFIDEPHMATYPLKSSENSEEEIEENASKTLQVNPEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDDEGRFRGFGHVEFATEEAALKVSCXADTCQVDNKQKTITEEANNNSKVPKFFNAFEFISSMSSAFDLSSLFETKRKTAAVFTSKCSTMSIMAKIAALAREARDHSGGVRGGGGGGCGRVGWRGREMS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4787g00013 248 Gene3D - 5 167 IPR012677 -
Vium4787g00013 248 SMART rrm1_1 88 160 IPR000504 GO:0003723
Vium4787g00013 248 Pfam NAF domain 170 222 IPR004041 GO:0007165
Vium4787g00013 248 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 230 - -
Vium4787g00013 248 ProSiteProfiles NAF domain profile. 168 193 IPR018451 GO:0007165
Vium4787g00013 248 SUPERFAMILY RNA-binding domain, RBD 80 160 IPR035979 GO:0003676
Vium4787g00013 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 166 IPR000504 GO:0003723
Vium4787g00013 248 Gene3D Kinase associated domain 1, KA1 168 227 - -
Vium4787g00013 248 MobiDBLite consensus disorder prediction 1 62 - -
Vium4787g00013 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 143 IPR000504 GO:0003723
Vium4787g00013 248 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4787g00013 Vium-Chr4787 89130 91966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4787g00013 170 221 CBL-interacting serine-threonine protein kinases AT5G10930 67.308 1.26e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4787g00013 - - vum:124839214 438.728