Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4787g00012 ATGGAGGATAAATCTAATCCCACACTCCATGTTGGTACTACTGCATTTCCACTTCCCCAAAAAGGCAGGAGGGAAGACGGGGATGAGCAAGAGAATCAAGGAAGTCCCAAAAGGCAGAAGAGAGATGAAGTTGCTGAGGAGCTCAAGAATGAGTTTCAGGAGGATATCAATATCTACGAGGGTGATAACTCTGAAGAAAGATATGAAGAAACAGAAGAGAAAACAATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTTGAAAGTGATTCTTCTAGTGATAGTTCAGATGACAACAACCATGATGACGATAACTCTGATTTTATTGACGAGCCACATATGGCTACATATCCTTTGAAAAGTTCAGAGAACAGTGAAGAAGAAATTGAGGAAAATGCCTCTAAAACTCTGCAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGCCGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACAGATGATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGCGCTAAAAGCACTTAAGTTAAATAATACAGAATTATTGAGATGTCGCATCAGAGTTGGTGTAGCTCGAGAAAGGCGAAAATATACCCGCAACAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGTTCAGAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGACAATTCCAAAAGATCAAGCTACTTGGAAGGAACAAAAAGCTACTTCGAAGACAATATATGCTAGAAATTTGTCTTATAGTGTGGAGAGGGATGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCATGAAGGGAGGTCAAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGGGTTGGATAATAAAAAATGGTTCGGACGATGCATCAGTGTTGGCATAGCTCAAGAAAGGAGTGAATATGCCTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCGCGAAAGAATTGATCCCATCAAAAGGACATGGAGTTCAGAGTCCTGTGAGGAAGATATTGAGGGAAAAGCCGTAAAAGATCCTTGGAAAACTTCTAGATTGTTGGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGCGGAAAAGGCTGATGTGGAAAATTTTTTCAAAGAATGTGGAGAAATCGTGGAAGTTAGGCTACACAGAGATAATGAGGGGAGGTTAAAAGGCTTTGGACATATTACGTTTGCAACAGCAGAAGCTGCACTAAAAGCTCTTGAATTGGATAATACAGAGTTTTTCAGACGTTGCATTGTAGTTCAAATAGCTCGAGGAAAGGGTGAACGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGCTACAGAGCATTCCGAGGACTGTAAGGAAGAAATTGAGGAAAAAGCCCACGAAAGTCCTCATGAAAGTCCTAAAACGCTAGCTACTCTGAAAGAACAAAATGCTTCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAGGGGAGGCCTAAAGGCTTTGTACATGTTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTAAGTTGAATCATACAGAATTTTTTGGACGTACCATTACAGTTGAATTAGCTCGAGAAAAAAATGATAACTACAGTAGAAGCAACAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATTTGTCAAGGGTTTTGATACTTCACTCGAGGAAAAAGAGATAAAAGCTAGCCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACCAGGATATTGATTCCGAAAATTTATGATTCTGGTGCATTTAAGGGGTTTGCTCTGGTAGAATTCAAGGATGTTGAGAGTGTGAAGACAGCTGTAGATCTTAATGAAAGTGAGATGGGAGGTTATACCTTGTTAGTTGAGAAAGCAAGGCCTCGACGTGGTGGAAATGGCTCTAAAAATGGTGGTGGATGGCATTCTGGTGGTGGCTGGCATTCTTTATTTTTCTCATGA 2358 0.394 MEDKSNPTLHVGTTAFPLPQKGRREDGDEQENQGSPKRQKRDEVAEELKNEFQEDINIYEGDNSEERYEETEEKTMEVLMDTTLDAQECDSKNVESDSSSDSSDDNNHDDDNSDFIDEPHMATYPLKSSENSEEEIEENASKTLQVNPEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDDEGRFRGFGHVEFATEEAALKALKLNNTELLRCRIRVGVARERRKYTRNRSFHVNYFSNKYQGSERIQPVRCSEISEDCEQETEEKDSKAVQTIPKDQATWKEQKATSKTIYARNLSYSVERDDMEILFKECGEIVDIRLQRDHEGRSRGFGHVQFATTEAAQKALGLDNKKWFGRCISVGIAQERSEYASNRSFSNWSNSFNKRERIDPIKRTWSSESCEEDIEGKAVKDPWKTSRLLATLKEENASSKTIYVKNLSYRAEKADVENFFKECGEIVEVRLHRDNEGRLKGFGHITFATAEAALKALELDNTEFFRRCIVVQIARGKGERTWNRSNSFQKHERFQPMKATEHSEDCKEEIEEKAHESPHESPKTLATLKEQNASPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHVEFSTAEAAQKALKLNHTEFFGRTITVELAREKNDNYSRSNNSFQKGERIQSLTVFVKGFDTSLEEKEIKASLEEHFGSCGEITRILIPKIYDSGAFKGFALVEFKDVESVKTAVDLNESEMGGYTLLVEKARPRRGGNGSKNGGGWHSGGGWHSLFFS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4787g00012 785 Gene3D - 530 669 IPR012677 -
Vium4787g00012 785 Gene3D - 79 247 IPR012677 -
Vium4787g00012 785 Gene3D - 256 389 IPR012677 -
Vium4787g00012 785 Gene3D - 390 529 IPR012677 -
Vium4787g00012 785 MobiDBLite consensus disorder prediction 21 79 - -
Vium4787g00012 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Vium4787g00012 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 522 IPR000504 GO:0003723
Vium4787g00012 785 MobiDBLite consensus disorder prediction 88 106 - -
Vium4787g00012 785 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 427 554 - -
Vium4787g00012 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 381 IPR000504 GO:0003723
Vium4787g00012 785 Gene3D - 671 781 IPR012677 -
Vium4787g00012 785 MobiDBLite consensus disorder prediction 1 142 - -
Vium4787g00012 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 679 760 IPR000504 GO:0003723
Vium4787g00012 785 SUPERFAMILY RNA-binding domain, RBD 289 394 IPR035979 GO:0003676
Vium4787g00012 785 SUPERFAMILY RNA-binding domain, RBD 440 534 IPR035979 GO:0003676
Vium4787g00012 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 582 658 IPR000504 GO:0003723
Vium4787g00012 785 SUPERFAMILY RNA-binding domain, RBD 155 258 IPR035979 GO:0003676
Vium4787g00012 785 SUPERFAMILY RNA-binding domain, RBD 575 671 IPR035979 GO:0003676
Vium4787g00012 785 SMART rrm1_1 680 756 IPR000504 GO:0003723
Vium4787g00012 785 SMART rrm1_1 163 234 IPR000504 GO:0003723
Vium4787g00012 785 SMART rrm1_1 306 377 IPR000504 GO:0003723
Vium4787g00012 785 SMART rrm1_1 447 518 IPR000504 GO:0003723
Vium4787g00012 785 SMART rrm1_1 583 654 IPR000504 GO:0003723
Vium4787g00012 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 232 IPR000504 GO:0003723
Vium4787g00012 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 584 652 IPR000504 GO:0003723
Vium4787g00012 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 515 IPR000504 GO:0003723
Vium4787g00012 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 681 753 IPR000504 GO:0003723
Vium4787g00012 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Vium4787g00012 785 SUPERFAMILY RNA-binding domain, RBD 674 778 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4787g00012 Vium-Chr4787 57575 87655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4787g00012 448 748 Eukaryotic Initiation Factors Gene Family AT2G36660 23.625 3.62e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4787g00012 - - pvu:PHAVU_003G282900g 1192.18