Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4787g00011 ATGGAGGATAAATCTAATCCCACACTCCATGTTGGTACTACTGCATTTCCACTTCCCCAAAAAGGCAGGAGGGAAGACGGGGATGAGCAAGAGAATCAAGGAAGTCCCAAAAGGCAGAAGAGAGATGAAGTTGCTGAGGAGCTCAAGAATGAGTTTCAGGAGGATATCAATATCTACGAGGGTGATAACTCTGAAGAAAGATATGAAGAAACAGAAGAGAAAACAATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTTGAAAGTGATTCTTCTAGTGATAGTTCAGATGACAACAACCATGATGACGATAACTCTGATTTTATTGACGAGCCACATATGGCTACATATCCTTTGAAAAGTTCAGAGAACAGTGAAGAAGAAATTGAGGAAAATGCCTCTAAAACTCTGCAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGCCGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACAGATGATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGCGCTAAAAGCACTTAAGTTAAATAATACAGAATTATTGAGATGTCGCATCAGAGTTGGTGTAGCTCGAGAAAGGCGAAAATATACCCGCAACAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGTTCAGAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGACAATTCCAAAAGATCAAGCTACTTGGAAGGAACAAAAAGCTACTTCGAAGACAATATATGCTAGAAATTTGTCTTATAGTGTGGAGAGGGATGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCATGAAGGGAGGTCAAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGGGTTGGATAATAAAAAATGGTTCGGACGATGCATCAGTGTTGGCATAGCTCAAGAAAGGAGTGAATATGCCTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCGCGAAAGAATTGATCCCATCAAAAGGACATGGAGTTCAGAGTCCTGTGAGGAAGATATTGAGGGAAAAGCCGTAAAAGATCCTTGGAAAACTTCTAGATTGTTGGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGCGGAAAAGGCTGATGTGGAAAATTTTTTCAAAGAATGTGGAGAAATCGTGGAAGTTAGGCTACACAGAGATAATGAGGGGAGGTTAAAAGGCTTTGGACATATTACGTTTGCAACAGCAGAAGCTGCACTAAAACCTAAAACGCTAGCTACTCTGAAAGAACAAAATGCTTCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAGGGGAGGCCTAAAGGCTTTGTACATGTTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTAAGTTGAATCATACAGAATTTTTTGGACGTACCATTACAGTTGAATTAGCTCGAGAAAAAAATGATAACTACAGTAGAAGCAACAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATTTGTCAAGGGTTTTGATACTTCACTCGAGGAAAAAGAGATAAAAGCTAGCCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACCAGGATATTGATTCCGAAAATTTATGATTCTGGTGCATTTAAGGGGTTTGCTCTGGTAGAATTCAAGGATGTTGAGAGTGTGAAGACAGCTGTAGATCTTAATGAAAGTGAGATGGGAGGTTATACCTTGTTAGTTGAGAAAGCAAGGCCTCGACGTGGTGGAAATGGCTCTAAAAATGGTGGTGGATGGCATTCTGGTGGTGGCTGGCATTCTTTATTTTTCTCATGA 2160 0.3917 MEDKSNPTLHVGTTAFPLPQKGRREDGDEQENQGSPKRQKRDEVAEELKNEFQEDINIYEGDNSEERYEETEEKTMEVLMDTTLDAQECDSKNVESDSSSDSSDDNNHDDDNSDFIDEPHMATYPLKSSENSEEEIEENASKTLQVNPEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDDEGRFRGFGHVEFATEEAALKALKLNNTELLRCRIRVGVARERRKYTRNRSFHVNYFSNKYQGSERIQPVRCSEISEDCEQETEEKDSKAVQTIPKDQATWKEQKATSKTIYARNLSYSVERDDMEILFKECGEIVDIRLQRDHEGRSRGFGHVQFATTEAAQKALGLDNKKWFGRCISVGIAQERSEYASNRSFSNWSNSFNKRERIDPIKRTWSSESCEEDIEGKAVKDPWKTSRLLATLKEENASSKTIYVKNLSYRAEKADVENFFKECGEIVEVRLHRDNEGRLKGFGHITFATAEAALKPKTLATLKEQNASPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHVEFSTAEAAQKALKLNHTEFFGRTITVELAREKNDNYSRSNNSFQKGERIQSLTVFVKGFDTSLEEKEIKASLEEHFGSCGEITRILIPKIYDSGAFKGFALVEFKDVESVKTAVDLNESEMGGYTLLVEKARPRRGGNGSKNGGGWHSGGGWHSLFFS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4787g00011 719 MobiDBLite consensus disorder prediction 21 79 - -
Vium4787g00011 719 SUPERFAMILY RNA-binding domain, RBD 289 394 IPR035979 GO:0003676
Vium4787g00011 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Vium4787g00011 719 MobiDBLite consensus disorder prediction 88 106 - -
Vium4787g00011 719 SUPERFAMILY RNA-binding domain, RBD 440 501 IPR035979 GO:0003676
Vium4787g00011 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 586 IPR000504 GO:0003723
Vium4787g00011 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 501 IPR000504 GO:0003723
Vium4787g00011 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 615 687 IPR000504 GO:0003723
Vium4787g00011 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Vium4787g00011 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 232 IPR000504 GO:0003723
Vium4787g00011 719 SUPERFAMILY RNA-binding domain, RBD 509 605 IPR035979 GO:0003676
Vium4787g00011 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 381 IPR000504 GO:0003723
Vium4787g00011 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 516 592 IPR000504 GO:0003723
Vium4787g00011 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 525 IPR000504 GO:0003723
Vium4787g00011 719 SUPERFAMILY RNA-binding domain, RBD 609 712 IPR035979 GO:0003676
Vium4787g00011 719 MobiDBLite consensus disorder prediction 1 142 - -
Vium4787g00011 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 284 387 - -
Vium4787g00011 719 Gene3D - 598 715 IPR012677 -
Vium4787g00011 719 SUPERFAMILY RNA-binding domain, RBD 155 258 IPR035979 GO:0003676
Vium4787g00011 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 613 694 IPR000504 GO:0003723
Vium4787g00011 719 Gene3D - 256 388 IPR012677 -
Vium4787g00011 719 Gene3D - 389 502 IPR012677 -
Vium4787g00011 719 Gene3D - 503 597 IPR012677 -
Vium4787g00011 719 Gene3D - 80 247 IPR012677 -
Vium4787g00011 719 SMART rrm1_1 163 234 IPR000504 GO:0003723
Vium4787g00011 719 SMART rrm1_1 447 516 IPR000504 GO:0003723
Vium4787g00011 719 SMART rrm1_1 306 377 IPR000504 GO:0003723
Vium4787g00011 719 SMART rrm1_1 517 588 IPR000504 GO:0003723
Vium4787g00011 719 SMART rrm1_1 614 690 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4787g00011 Vium-Chr4787 57575 87655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4787g00011 447 676 Eukaryotic Initiation Factors Gene Family AT4G34110 24.016 1.34e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4787g00011 - - pvu:PHAVU_003G282900g 808.52