Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4787g00010 ATGGAGGATAAATCTAATCCCACACTCCATGTTGGTACTACTGCATTTCCACTTCCCCAAAAAGGCAGGAGGGAAGACGGGGATGAGCAAGAGAATCAAGGAAGTCCCAAAAGGCAGAAGAGAGATGAAGTTGCTGAGGAGCTCAAGAATGAGGAGGATATCAATATCTACGAGGGTGATAACTCTGAAGAAAGATATGAAGAAACAGAAGAGAAAACAATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTTGAAAGTGATTCTTCTAGTGATAGTTCAGATGACAACAACCATGATGACGATAACTCTGATTTTATTGACGAGCCACATATGGCTACATATCCTTTGAAAAGTTCAGAGAACAGTGAAGAAGAAATTGAGGAAAATGCCTCTAAAACTCTGCAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGCCGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACAGATGATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGCGCTAAAAGCACTTAAGTTAAATAATACAGAATTATTGAGATGTCGCATCAGAGTTGGTGTAGCTCGAGAAAGGCGAAAATATACCCGCAACAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGTTCAGAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGACAATTCCAAAAGATCAAGCTACTTGGAAGGAACAAAAAGCTACTTCGAAGACAATATATGCTAGAAATTTGTCTTATAGTGTGGAGAGGGATGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCATGAAGGGAGGTCAAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGGGTTGGATAATAAAAAATGGTTCGGACGATGCATCAGTGTTGGCATAGCTCAAGAAAGGAGTGAATATGCCTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCGCGAAAGAATTGATCCCATCAAAAGGACATGGAGTTCAGAGTCCTGTGAGGAAGATATTGAGGGAAAAGCCGTAAAAGATCCTTGGAAAACTTCTAGATTGTTGGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGCGGAAAAGGCTGATGTGGAAAATTTTTTCAAAGAATGTGGAGAAATCGTGGAAGTTAGGCTACACAGAGATAATGAGGGGAGGTTAAAAGGCTTTGGACATATTACGTTTGCAACAGCAGAAGCTGCACTAAAAGCTCTTGAATTGGATAATACAGAGTTTTTCAGACGTTGCATTGTAGTTCAAATAGCTCGAGGAAAGGGTGAACGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGCTACAGAGCATTCCGAGGACTGTAAGGAAGAAATTGAGGAAAAAGCCCACGAAAGTCCTCATGAAAGTCCTAAAACGCTAGCTACTCTGAAAGAACAAAATGCTTCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAGGGGAGGCCTAAAGGCTTTGTACATGTTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTAAGTTGAATCATACAGAATTTTTTGGACGTACCATTACAGTTGAATTAGCTCGAGAAAAAAATGATAACTACAGTAGAAGCAACAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATTTGTCAAGGGTTTTGATACTTCACTCGAGGAAAAAGAGATAAAAGCTAGCCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACCAGGATATTGATTCCGAAAATTTATGATTCTGGTGCATTTAAGGGGTTTGCTCTGGTAGAATTCAAGGATGTTGAGAGTGTGAAGACAGCTGTAGATCTTAATGAAAGTGAGATGGGAGGTTATACCTTGTTAGTTGAGAAAGCAAGGCCTCGACGTGGTGGAAATGGCTCTAAAAATGGTGGTGGATGGCATTCTGGTGGTGGCTGGCATTCTTTATTTTTCTCATGA 2352 0.3941 MEDKSNPTLHVGTTAFPLPQKGRREDGDEQENQGSPKRQKRDEVAEELKNEEDINIYEGDNSEERYEETEEKTMEVLMDTTLDAQECDSKNVESDSSSDSSDDNNHDDDNSDFIDEPHMATYPLKSSENSEEEIEENASKTLQVNPEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDDEGRFRGFGHVEFATEEAALKALKLNNTELLRCRIRVGVARERRKYTRNRSFHVNYFSNKYQGSERIQPVRCSEISEDCEQETEEKDSKAVQTIPKDQATWKEQKATSKTIYARNLSYSVERDDMEILFKECGEIVDIRLQRDHEGRSRGFGHVQFATTEAAQKALGLDNKKWFGRCISVGIAQERSEYASNRSFSNWSNSFNKRERIDPIKRTWSSESCEEDIEGKAVKDPWKTSRLLATLKEENASSKTIYVKNLSYRAEKADVENFFKECGEIVEVRLHRDNEGRLKGFGHITFATAEAALKALELDNTEFFRRCIVVQIARGKGERTWNRSNSFQKHERFQPMKATEHSEDCKEEIEEKAHESPHESPKTLATLKEQNASPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHVEFSTAEAAQKALKLNHTEFFGRTITVELAREKNDNYSRSNNSFQKGERIQSLTVFVKGFDTSLEEKEIKASLEEHFGSCGEITRILIPKIYDSGAFKGFALVEFKDVESVKTAVDLNESEMGGYTLLVEKARPRRGGNGSKNGGGWHSGGGWHSLFFS 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4787g00010 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 580 656 IPR000504 GO:0003723
Vium4787g00010 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Vium4787g00010 783 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 424 552 - -
Vium4787g00010 783 SMART rrm1_1 581 652 IPR000504 GO:0003723
Vium4787g00010 783 SMART rrm1_1 678 754 IPR000504 GO:0003723
Vium4787g00010 783 SMART rrm1_1 161 232 IPR000504 GO:0003723
Vium4787g00010 783 SMART rrm1_1 445 516 IPR000504 GO:0003723
Vium4787g00010 783 SMART rrm1_1 304 375 IPR000504 GO:0003723
Vium4787g00010 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 446 513 IPR000504 GO:0003723
Vium4787g00010 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 679 751 IPR000504 GO:0003723
Vium4787g00010 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 372 IPR000504 GO:0003723
Vium4787g00010 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 230 IPR000504 GO:0003723
Vium4787g00010 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 582 650 IPR000504 GO:0003723
Vium4787g00010 783 Gene3D - 669 779 IPR012677 -
Vium4787g00010 783 SUPERFAMILY RNA-binding domain, RBD 287 392 IPR035979 GO:0003676
Vium4787g00010 783 MobiDBLite consensus disorder prediction 86 104 - -
Vium4787g00010 783 SUPERFAMILY RNA-binding domain, RBD 438 532 IPR035979 GO:0003676
Vium4787g00010 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 236 IPR000504 GO:0003723
Vium4787g00010 783 SUPERFAMILY RNA-binding domain, RBD 153 256 IPR035979 GO:0003676
Vium4787g00010 783 SUPERFAMILY RNA-binding domain, RBD 573 669 IPR035979 GO:0003676
Vium4787g00010 783 Gene3D - 388 527 IPR012677 -
Vium4787g00010 783 Gene3D - 254 387 IPR012677 -
Vium4787g00010 783 Gene3D - 75 245 IPR012677 -
Vium4787g00010 783 Gene3D - 528 667 IPR012677 -
Vium4787g00010 783 MobiDBLite consensus disorder prediction 1 146 - -
Vium4787g00010 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 677 758 IPR000504 GO:0003723
Vium4787g00010 783 MobiDBLite consensus disorder prediction 21 77 - -
Vium4787g00010 783 SUPERFAMILY RNA-binding domain, RBD 672 776 IPR035979 GO:0003676
Vium4787g00010 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 444 520 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4787g00010 Vium-Chr4787 57575 87655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4787g00010 446 746 Eukaryotic Initiation Factors Gene Family AT2G36660 23.625 3.52e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4787g00010 - - pvu:PHAVU_003G282900g 1182.93