Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4786g00012 ATGCCTGATTTACCACCTGAGATGAGACACAATGTGTCAGAAGAGGCACACCCTAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAAGAACTCACCAAGTCATCCCAATAATGTGAACCAAGCAGAAAAAGAGACCTTCAGAGCAGCAAATGTCCACACTTCAGGAAGGGAAACTGGACAATTGGACCAAGTTTCAAAATCTGATAATGCAAAGTGGGAAGGTAAATCAAGACCCCAGAGGCTAATTCCACCAAACAGGAATATCTCTGACTTCAGCCCTCAACAACACCAAAGTCCAAGCACAACAAAAAAGCCTGGTCAAAACCCTGATCATCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGCATCATGGGAGTACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACCCATTAGGCCACATACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGATTTCAAAGTGCGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTTCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTAGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCTCTGAAGAAGCTGCCAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAGGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTAGTCAAATCTTCATCTGCCCATGCAAGCAACAATAGTGGTGGCAACAGTGACTCCAGTGGCGTACTAAGTGATGACCAAGCAAGCACAACTCAAGCATCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCGGATTTTGGCCTATTGGTTGGTGGAGCACGCCTTCCTGAACTGATGGCAGAACCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGAATCTTCTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCTCAGGTCAGTTCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACGGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCACACATACCAGATACTATAGACTTCACCAAGTATGCCAGCAAAGACACACCACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAACCATAATGCTAGTGATTCTTACGTAGATTTTGAGTATTTTTAG 1698 0.4494 MPDLPPEMRHNVSEEAHPSVHSSCAKSGKNSPSHPNNVNQAEKETFRAANVHTSGRETGQLDQVSKSDNAKWEGKSRPQRLIPPNRNISDFSPQQHQSPSTTKKPGQNPDHHHSKTVSVSTPHGKTSHHGSTGSRSNSLESTSAPIRPHTGGDVRWEAINMISKCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKFYCLVMEFCSGGDLHTLRQKQPNKCFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHASNNSGGNSDSSGVLSDDQASTTQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGSTPFKGAGYKATLFNVVGQPLRFPETPQVSSVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDTIDFTKYASKDTPPPVDKKMADIANDKHNHNASDSYVDFEYF 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4786g00012 565 Gene3D Transferase(Phosphotransferase) domain 1 399 523 - -
Vium4786g00012 565 Pfam Protein kinase domain 396 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4786g00012 565 Pfam Protein kinase domain 174 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4786g00012 565 FunFam Serine/threonine-protein kinase AGC1-7 398 523 - -
Vium4786g00012 565 ProSiteProfiles Protein kinase domain profile. 173 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4786g00012 565 SUPERFAMILY Protein kinase-like (PK-like) 162 538 IPR011009 -
Vium4786g00012 565 MobiDBLite consensus disorder prediction 112 145 - -
Vium4786g00012 565 FunFam Serine/threonine-protein kinase D6PK-like 171 256 - -
Vium4786g00012 565 MobiDBLite consensus disorder prediction 17 67 - -
Vium4786g00012 565 FunFam serine/threonine-protein kinase D6PK-like 257 324 - -
Vium4786g00012 565 MobiDBLite consensus disorder prediction 333 354 - -
Vium4786g00012 565 Gene3D Phosphorylase Kinase; domain 1 171 256 - -
Vium4786g00012 565 MobiDBLite consensus disorder prediction 1 150 - -
Vium4786g00012 565 CDD STKc_phototropin_like 171 526 - -
Vium4786g00012 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Vium4786g00012 565 MobiDBLite consensus disorder prediction 82 105 - -
Vium4786g00012 565 Gene3D Transferase(Phosphotransferase) domain 1 257 327 - -
Vium4786g00012 565 PANTHER FLIPPASE KINASE 1-RELATED 28 531 - -
Vium4786g00012 565 SMART serkin_6 173 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4786g00012 Vium-Chr4786 85437 88377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4786g00012 139 565 AGC Kinase Gene Family AT1G79250 71.460 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium4786g00012 Pkinase 3.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4786g00012 - - gmx:100784301 939.488