Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4786g00005 ATGGCCGCTGCCGACTCCTCCGCCGCCGCTCCTTTACGCCAGCTCTCGCAGAAGGAGACGGACATCCAGATGATGCTCGCCGCCGATGTGCATCTCGGCACAAAAAACTGCGACTTCCAAATGGAACGCTACGTCTTCAAGCGCCGCACTGACGGTATATACATAATTAACCTTGGCAAAACATGGGAGAAGCTCCTTCTTGCTGCTAGGATAATTGTTGCCATTGAGAACCCACAAGATATTATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTGCTTAAGTTTGCTCAATACACCGGGGCTCATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACCAATCAGATGCAGACATCCTACAATGAGCCTCGTCTTCTAATTCTCACTGATCCAAGAACAGATCATCAGCCTATTAAGGAAGGTGCTCTTGGCAACATTCCCACTATTGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGACGTTGGGATTCCGGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTGTTTTGGCTTTTAGCTCGCATGGTGCTGCAGATGCGGGGTACTATTCGTCCAGGTCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAAGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATCGATTTCAATGATACTGCCATTAGCAGCTTCCCTGCCGACAGACAATGGCCTACTGCACTCGACCAACCTTGGACAGGGGACGCTCCACAACCAATTCCAGCAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGCGAGGCTGTTCCTGCACCGGTTCCTGCTGCCGTACCGGCTCCACAAGTTGGTGTGCCTCCAGCCCAAACTTTTCCTGCTACTGGCTGGGACTAG 942 0.5085 MAAADSSAAAPLRQLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLLLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAIDFNDTAISSFPADRQWPTALDQPWTGDAPQPIPAVPTNWTPETAAAGDWGEAVPAPVPAAVPAPQVGVPPAQTFPATGWD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4786g00005 313 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 Gene3D - 21 226 - -
Vium4786g00005 313 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Vium4786g00005 313 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 PANTHER 40S RIBOSOMAL PROTEIN SA 13 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vium4786g00005 313 MobiDBLite consensus disorder prediction 249 313 - -
Vium4786g00005 313 FunFam 40S ribosomal protein SA 21 227 - -
Vium4786g00005 313 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium4786g00005 313 Hamap 40S ribosomal protein SA [rps-0]. 9 285 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vium4786g00005 313 NCBIfam 30S ribosomal protein S2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4786g00005 Vium-Chr4786 38742 41382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4786g00005 4 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.822 4.24e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4786g00005 K02998 - gmx:100786575 540.806