Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4783g00001 GAAAGTAGTTTGAAATACTGTGATAACCCAGGTTCGATTCAATGTAGGGCTGTACGTGCTATGAATGAAACTCTGAAGCAAAATCGTCTCTTGAGAGAACGAGGGGATGATAACTCTACGAACAATAACAGTAGTGATGCAAATCTTCAGAAAAATGTGTCAAATTTTCATCTTGATGGTCATGATGCACTATATTCTCGTCAACATGACCAAGGAAACTCACAAAAGGCAATGTCATTACCATCTTCACCTCATGAATATAGAGGTCATTCTTCGGAGAGAATTGGACTGTCGAGAGAAGGAGTGAATGATGAAATGGAGTCAACTTGGAATAAAGTACTGGAATCTCAAATGTTCAATAATAAACCTCTTTTACCATACGAAAAATGGAATATTGACTTCTCTGAATTGACTGTTGGAACTCGGGTAGGAATTGGTTTCTTTGGAGAGGTTTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAATATGGAAGATTTTTGCAATGAGATATCTATTCTGAGCCGACTCCGACATCCTAATGTTATATTGTTTCTCGGTGCATGCACAAAGCCTCCACGGTTGTCAATGGTTACAGAATATATGGAATTGGGATCGTTGTATTACTTGATACATTTAAGTGGTCAAAAGAAGAAGCTTAATTGGCGGAGAAGACTAAGGATGTTACGTGACATATGCAAGGGTTTGATGTGCATACATCGAATGAAGGTTGTTCACCGTGATCTGAAAAGCGCAAATTGTCTGGTGAATAAGCATTGGACTGTGAAAATATGTGATTTTGGGCTTTCAAGATTAATGACAGAGTCTCCTATGAGAGATTCTTCCTCGGCTGGAACTCCGGAATGGATGGCTCCTGAGCTCATTCGAAATGAACCATTCACAGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAACTATGCACATTGAGCAGACCATGGGAAGGAATACCACCTGAGAGGGTGGTCTATTCCGTTGCAAATGAGGCTTCCAGATTGGAAATACCAGAAGGCCCTCTAGGAAGGCTTATTTCAGATTGTTGGGCAGAATCCCATGAGCGGCCAAGTTGTGAGGAGATTCTTTCTCGTTTGGTGGACATCGAGTACTCCTTGTGTTGA 1182 0.4078 ESSLKYCDNPGSIQCRAVRAMNETLKQNRLLRERGDDNSTNNNSSDANLQKNVSNFHLDGHDALYSRQHDQGNSQKAMSLPSSPHEYRGHSSERIGLSREGVNDEMESTWNKVLESQMFNNKPLLPYEKWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMELGSLYYLIHLSGQKKKLNWRRRLRMLRDICKGLMCIHRMKVVHRDLKSANCLVNKHWTVKICDFGLSRLMTESPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWEGIPPERVVYSVANEASRLEIPEGPLGRLISDCWAESHERPSCEEILSRLVDIEYSLC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4783g00001 393 Gene3D Phosphorylase Kinase; domain 1 130 215 - -
Vium4783g00001 393 Gene3D Transferase(Phosphotransferase) domain 1 216 391 - -
Vium4783g00001 393 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 385 - -
Vium4783g00001 393 ProSitePatterns Protein kinases ATP-binding region signature. 143 164 IPR017441 GO:0005524
Vium4783g00001 393 SUPERFAMILY Protein kinase-like (PK-like) 110 385 IPR011009 -
Vium4783g00001 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vium4783g00001 393 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Vium4783g00001 393 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Vium4783g00001 393 PRINTS Tyrosine kinase catalytic domain signature 250 268 IPR001245 GO:0004672|GO:0006468
Vium4783g00001 393 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672|GO:0006468
Vium4783g00001 393 MobiDBLite consensus disorder prediction 68 93 - -
Vium4783g00001 393 MobiDBLite consensus disorder prediction 31 50 - -
Vium4783g00001 393 Pfam Protein tyrosine and serine/threonine kinase 138 385 IPR001245 GO:0004672|GO:0006468
Vium4783g00001 393 SMART serkin_6 137 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4783g00001 393 CDD STKc_MAP3K-like 143 385 - -
Vium4783g00001 393 ProSiteProfiles Protein kinase domain profile. 137 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4783g00001 393 FunFam Serine/threonine-protein kinase isoform 1 127 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4783g00001 Vium-Chr4783 4633 11979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4783g00001 15 393 MAP Kinase Kinase Kinase AT3G58640 74.160 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vium4783g00001 PK_Tyr_Ser-Thr 2.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4783g00001 - - vum:124839195 808.905