Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4779g00003 ATGCTGATCACTACCTCTCTTACAGACATAAAATCGACTGTGGAATATATCACCTCCATGGATTTCACGGCAACCGAGTTCCGGCGTATGGTTGGCATGTGCCCGGAGATTCTGACCACCAATGTCTCTGACATCATACCGGTGTTCACCTTCCTTCATCGCGAGGTACACGTGCATTGTTCAGACATCAAGCGGGTCATAAATCGGCGTCCCAGGTTGCTTGTCTGCAGTGTCAGTAAGCGACTTCGTCCTACCCTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCATACTGACTTGCTATCATGTAGTGTTGAAGAAAAGTTCATGCCCAGAGTTGATTACTTTGAGAATATTGGGTTTTCTCGCCGTGATGCAACTTTAATGTTTCGCAGATTTCCTCAGCTGTTTTGTTATAGTATTAAAAATAATTTGGAGCCTAAATACAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGATAGAATTTCCACAATATTTCTCATTTAGCCTTGAGAATAGAATTAAGCCTAGGCATAAAAAGTGTGTAGAAATGGGGCTGTGTTTTCCTCTCCCTGCCTTGTTAAAAACAAAGGAAGTGAAATTTCAAAGTAGATTGGAAGTATTTGTAAATTCTTCAACACCCTTGAAAACATCCCCTCTGTGGTGTGCTGGCTCTGATTTTTATCAAGTATAG 714 0.4174 MLITTSLTDIKSTVEYITSMDFTATEFRRMVGMCPEILTTNVSDIIPVFTFLHREVHVHCSDIKRVINRRPRLLVCSVSKRLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRVDYFENIGFSRRDATLMFRRFPQLFCYSIKNNLEPKYSYFVVEMGRDLKELIEFPQYFSFSLENRIKPRHKKCVEMGLCFPLPALLKTKEVKFQSRLEVFVNSSTPLKTSPLWCAGSDFYQV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4779g00003 237 Gene3D Transcription termination factor 3, mitochondrial 1 218 IPR038538 -
Vium4779g00003 237 FunFam Transcription termination factor MTEF1, chloroplastic 52 216 - -
Vium4779g00003 237 PANTHER CGI-12 PROTEIN-RELATED 10 217 IPR003690 GO:0003690|GO:0006355
Vium4779g00003 237 Pfam mTERF 55 209 IPR003690 GO:0003690|GO:0006355
Vium4779g00003 237 SMART mt_12 96 125 IPR003690 GO:0003690|GO:0006355
Vium4779g00003 237 SMART mt_12 28 59 IPR003690 GO:0003690|GO:0006355
Vium4779g00003 237 SMART mt_12 64 95 IPR003690 GO:0003690|GO:0006355
Vium4779g00003 237 SMART mt_12 163 194 IPR003690 GO:0003690|GO:0006355
Vium4779g00003 237 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4779g00003 mTERF 3.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4779g00003 K15031 - gmx:100794678 432.95