Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4778g00001 ATGTGTGTTTATGTGCACCCTTGTGGTGACTACAACAGAAAAGGTTGTACCTTTTTTTTGAAGTCTCTTTTGGGTTCAGCAATGGCTGTGTTCATGGCAATATTGGGTGTAGTGGTGGTGCTCTGTTTTTGCTCTGCTCTCTTGAGGTGGAATGAAGTAAGGTACAGGAAAAAAGGTTTGCCTCCTGGCACAATGGGTTGGCCAGTTTTTGGGGAGACAACAGAGTTTCTCAAACAGGGTCCAAACTTCATGAAAAACCAGAGAGCAAGGTATGGCAGTTTTTTCAAATCCCACATACTTGGTTGTCCTACCATTGTGTCCATGGATCCAGAGCTTAATAGATACATCCTAATGAATGAGGCAAAAGGTCTTGTTCCTGGATACCCTCAATCCATGTTAGATATCTTAGGCAAATGTAACATTGCAGCTGTTCATGGCTCCACCCACAAGTACATGAGAGGAGCACTGCTTTCCATCATTAGCCCCACCTCGATCAGAGATCAGCTTTTGCCAAAAATTGATGAGTTCATCAGAGCCCACCTTAGCAACTGGGATAACAAAGTCATCAACATTCAAGAGAAAACCAAGGAGATGGCCTTCCTCTCATCTCTGAAGCAGATTGCTGGCAGAGAATCTGTCTCGTTGTCTGACTCATTCATGACAGAGTTCTTTAAGCTTGTTCTTGGAACCATTTCTCTACCTATTAACCTTCCTGGGACAAATTACCACCGTGGATTCCAGGCAAGGAAGACTATGGTCAATGTTCTGAGTAAGCTACTGGAGGAAAGAAGAGCATCCAATGAAACCTACCATGACATGCTTGGTTGCTTGATGGCAAGAGAGGAAAACAGATACAAACTAAGTGATGAAGAAATCATTGATCTGGTGATAACGGTCATATATTCTGGTTATGAAACTGTTTCAACTACATCAATGATGGCAGTGAAGTACCTCCATGACCATCCCAAAGCTCTTGAAGAACTCAGAAAAGAGCATTTGGCCATAAGAGAGAGGAAAAAGCATGATGAGCCAATTGACTGGAATGACCTCAAGTCAATGAGTTTTACTCGAGCGGTGATTTTTGAGACCTCTAGATTGGCCACAATAGTTAATGGGGTCCTAAGGAAAACCACTCAAGACATGGAACTAAACGGCTATTTGATTCCCAAAGGATGGAGAATATATGTGTACACAAGAGAGATCAACTATGACCCTTTTCTATATCCTGATCCTCTCACTTTCAACCCATGGAGATGGCTGGATAAGAGTCTCGAATCAAAAAACTACTTCTTGATATTTGGAGGAGGCACCAGACTATGTCCAGGAAAAGAGTTGGGAATAACAGAAATTTCCACTTTCCTACACTACTTTGTAACCAGATACAGGTGA 1389 0.4233 MCVYVHPCGDYNRKGCTFFLKSLLGSAMAVFMAILGVVVVLCFCSALLRWNEVRYRKKGLPPGTMGWPVFGETTEFLKQGPNFMKNQRARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVPGYPQSMLDILGKCNIAAVHGSTHKYMRGALLSIISPTSIRDQLLPKIDEFIRAHLSNWDNKVINIQEKTKEMAFLSSLKQIAGRESVSLSDSFMTEFFKLVLGTISLPINLPGTNYHRGFQARKTMVNVLSKLLEERRASNETYHDMLGCLMAREENRYKLSDEEIIDLVITVIYSGYETVSTTSMMAVKYLHDHPKALEELRKEHLAIRERKKHDEPIDWNDLKSMSFTRAVIFETSRLATIVNGVLRKTTQDMELNGYLIPKGWRIYVYTREINYDPFLYPDPLTFNPWRWLDKSLESKNYFLIFGGGTRLCPGKELGITEISTFLHYFVTRYR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4778g00001 462 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS E-class P450 group I signature 440 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 CDD CYP90-like 87 462 - -
Vium4778g00001 462 Gene3D Cytochrome P450 51 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 FunFam Cytochrome P450 85A1 51 462 - -
Vium4778g00001 462 Pfam Cytochrome P450 61 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PANTHER CYTOCHROME P450 26 57 461 - -
Vium4778g00001 462 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 SUPERFAMILY Cytochrome P450 54 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4778g00001 462 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4778g00001 Vium-Chr4778 7 3618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4778g00001 108 462 Cytochrome P450 AT5G38970 71.067 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4778g00001 K09590 - gmx:100805958 823.157