Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4776g00006 ATGCCTGAAGAAACGACGTCGATTGACTACGTCATGGAGGCCGCATCCGGGGCCCACTTCTCCGGCCTTAGACTCGACGGCTTGCTACCTTCCTCCGCCACCGCCTCCGCCGCTCCTGATTCAACCCTAGCCCCGGATTCCCACCCCAATCGCCCTTTCGTTATTGGAGTTTCCGGAGGTACTGCCTCTGGGAAAACCACTGTCTGCGACATGATCATTCAGCAGCTTCACGATCACCGCGTCGTCCTAGTCAATCAGGACTCCTTTTATCGTGGGCTGAGACCGGAAGAGTTGGAACGTGTTCATGAGTACAATTTCGATCACCCTGATGCTTTTGACACCGAGCAGTTGTTAGAGTGCATGGGGAAACTCATTAGTGGCCAGGGCGTGCACGTTCCCATCTATGACTTCAAGAAACATCAGCGTTCTTCTGATAGTTTTCGCCAGGTTAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTATTCCACGATCAGCATGTGCGGGATCTCATGAACATGAAGATCTTTGTAGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTTGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGAGGAGGTGATAATCATGTAGCCATTGATTTGATCGTGCAACATATTCGGACAAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACGTTCCAGATAAGAGGGATGCATACATTGATTAGGGACCGAGACATATCAAAGCATGATTTCGTGTTTTATTCAGATCGTCTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAAAAGTTGTGTGGTGTTTCAATTGTACGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGTAAAATTCTGATTCACCGGGATGGAGACAACGGAAAACAGCTTATATATGAAAAGCTTCCCAAGGATATTTCAGAACGGCATGTTTTGCTTCTTGACCCGGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAACCACATTATATTCCTGAACCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGTAAAAGGTTTCCGTCATTGAAGATTGTAACATCTGAGATTGATGTTGAACTGAATGAAGAGTACCGTGTTATCCCAGGATTAGGTGAATTTGGTGATCGCTACTTTGGCACCGATGATTGA 1422 0.4508 MPEETTSIDYVMEAASGAHFSGLRLDGLLPSSATASAAPDSTLAPDSHPNRPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELERVHEYNFDHPDAFDTEQLLECMGKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQHVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVELNEEYRVIPGLGEFGDRYFGTDD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4776g00006 473 Pfam Phosphoribulokinase / Uridine kinase family 54 240 IPR006083 GO:0005524|GO:0016301
Vium4776g00006 473 FunFam Uridine kinase 49 255 - -
Vium4776g00006 473 PRINTS Uridine kinase signature 82 93 - -
Vium4776g00006 473 PRINTS Uridine kinase signature 220 233 - -
Vium4776g00006 473 PRINTS Uridine kinase signature 184 194 - -
Vium4776g00006 473 PRINTS Uridine kinase signature 198 209 - -
Vium4776g00006 473 PRINTS Uridine kinase signature 127 142 - -
Vium4776g00006 473 PRINTS Uridine kinase signature 52 69 - -
Vium4776g00006 473 PANTHER URIDINE KINASE 47 382 - -
Vium4776g00006 473 Gene3D - 256 471 IPR029057 -
Vium4776g00006 473 Pfam Uracil phosphoribosyltransferase 270 471 - -
Vium4776g00006 473 MobiDBLite consensus disorder prediction 34 57 - -
Vium4776g00006 473 FunFam Uridine kinase 256 471 - -
Vium4776g00006 473 SUPERFAMILY PRTase-like 255 472 IPR029057 -
Vium4776g00006 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 245 IPR027417 -
Vium4776g00006 473 CDD UMPK 54 252 IPR000764 -
Vium4776g00006 473 Gene3D - 49 255 IPR027417 -
Vium4776g00006 473 CDD PRTases_typeI 329 444 IPR000836 -
Vium4776g00006 473 NCBIfam uridine kinase 52 252 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4776g00006 Vium-Chr4776 67480 73509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4776g00006 1 473 PRT Gene Family AT5G40870 85.537 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4776g00006 K00876 - gmx:100780005 897.501