Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4775g00018 ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTGCTGAGACGTCGTTGCTCCAAGGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTCTTCGGTGCTAGCAATGTCAGCAAAATGCTGCAGGAACTTGGTGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTACGAGGCAAACGCAAGAGTGAGAGATCCAGTGTATGGATGTGTTGGAGCCATATCATACCTACAAAACCAGGTTTCACAGTTGCAAATGCAACTTGCAGTGGCTCAAGCTGAGATTCTATGCATTCAGATGCAGCAACAAGAACCTACCATCACCACACAAGTAGACCAAGATCAAAAATCACTGCTTCTCTCTGTAAACAATAACTATGAAACTCTTCCTCACTATCTTAACTTTCCTTCATCTTCTTCCTCCTCTTCAAATGTCTTCCATGACCCTCATGAGCCTCTCAAGAGAGAGTCTTTTTGGGCTTGA 516 0.4438 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELGVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQQEPTITTQVDQDQKSLLLSVNNNYETLPHYLNFPSSSSSSSNVFHDPHEPLKRESFWA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4775g00018 171 Coils Coil 85 105 - -
Vium4775g00018 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 142 - -
Vium4775g00018 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vium4775g00018 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4775g00018 Vium-Chr4775 98308 99693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4775g00018 3 170 AS2 family AT2G30130 65.608 1.31e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium4775g00018 LOB 3.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4775g00018 - - gmx:100780073 311.997