Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4775g00001 ATGGCTGCAGCGATGGAGTGCTGGTCGCGCCGCACCACCAGTGACGAGGACGACGCATTCCTCACCGCACATTCCTCGCAACCCCGAGACTCTTCTTCTTCGTCTTCCCCCTCTTCCTCTCTCGTCCACAAGAAGCTCCTCAAACTCACGCGCAACGTCTCCGAGGCTCTTTCCTCCCTCAGAAACTCCCTTACCACTATGAATGATTCTTCCAAACCCGACGCACCTCGCAACCTTGTGTGGACGGCCGTCGTGCGCAATCTCAGCCACATATACCCCGGGACCCATCTCCCTGAGAAGCTTGTCTGCAACATTCGCAAGCACTATGACTCCCTGCCTCTCAGTTATTCTCAGGCAGGGTTTGATGTGAAAGATGTGTTTCTTCACATGAAGCTGATGGAGCAAGCTTTGGAAGATGAGCAGGCTGCGATTTTGATTCAAGAGGAGGGTGATGGTGAGATTCAACTTCAGGGGTCTTTGTTCAAGTTGACATTCGCTTGCAACTCTCCTATTTCATGGCCCGCAATGTCAAGAGCGTTGGATGGTTACTCCATTTGCTGCAAGAAGATTCAGATATTTGAGAAGAAAGGATTCACCCTTGGGATTGTGCTTCTTCTTGTACTGTCAAGTGGTCAGCATGATAAGTTGGTCAGGACCCAGGTTGAAAATGCTCTCAAGATATCCATGAAGAGGCCTAAAGCCAGCGGTGTGAAGCTTCCCTTTGGTCTTTGTGGATGTCAAGAAGAGAACACCAAAGGGAGAGGACATGGAGAGATCGAGGAAGATGGTGGTGATGCATGTTGTGGAAATGGGTTTGATAATTTGAGCCAAAAGTTTCAGCTTCAGGTGCCATTACCTAGTTCATCTTTTCTTGTAGTGGTAGATGAATGGCAGACTATTCAATCAGGTGGGAATGATAATGAAAAATGGTTGTTGAACTCAGATCGTCTTGAGTTTGCAGAACAGATTGGGCCCAATTCGTATAAGGGGATGTACATGGGAAGAAAAGTTGGCATCGAGAAGCTTAGAGGGTGTGATAAAGGGAACTCTTACGAGTTTGAGCTCAGGAAAGACCTGCTGGCATTGATGACCTGTGGTCATAGAAATATTATGCAATTTTTTGGTGTTTGTGTGGATGACAACTATGGGTTATGTGTATTGACAAAACTTGTGGAAGGTGGATCTGTTCACGACTTAATGTTAAAGAATAAGAAGCTTTCGAGCAAGGATGTTGTAAGAATTGCAGTTGATGTGGCTGAGGGGATGAAGTTTATGAATGATCACGGTGTTGCATACAGAGACCTTAATACGCAGAAGATTGTTTTGGATAAGCATGGGAATGCTTTCTTGGGTGATATGGGTATTGTCACTGCTTGCGAGAGTGTTGGAGAGGCAATGGAGTATGAAACTGATGGTTATCGGTGGCTAGCACCAGAGATAATTGCTAGTGATCCAGAGAGTGTAACAGAGACATGGATGAGTAATGCTTATAGTTTTGGAATGATTATTTGGGAGATGGTAACTGGTGAGGCGGCATATTCTGCATATTCACCCGTGCAAGCAGCAGTTGGCATTGCTGCTTGTGGCCTAAGACCTGAAATCCCCAAGGACTGCCCTCAAACTCTAAAGTCTCTCATGATAAAGTGCTGGAACAACACCCCTTCAAAACGCCCTAACTTCTCTGAAATTTTGGCCATATTGCTACGACAAAACAACTACAATAGATCGATGCAACCTATTCTCACTCTTAACTGGGCACATAGAAATTTACGCTTATCTGCTACAATTATCACATTGAAGTGA 1803 0.4559 MAAAMECWSRRTTSDEDDAFLTAHSSQPRDSSSSSSPSSSLVHKKLLKLTRNVSEALSSLRNSLTTMNDSSKPDAPRNLVWTAVVRNLSHIYPGTHLPEKLVCNIRKHYDSLPLSYSQAGFDVKDVFLHMKLMEQALEDEQAAILIQEEGDGEIQLQGSLFKLTFACNSPISWPAMSRALDGYSICCKKIQIFEKKGFTLGIVLLLVLSSGQHDKLVRTQVENALKISMKRPKASGVKLPFGLCGCQEENTKGRGHGEIEEDGGDACCGNGFDNLSQKFQLQVPLPSSSFLVVVDEWQTIQSGGNDNEKWLLNSDRLEFAEQIGPNSYKGMYMGRKVGIEKLRGCDKGNSYEFELRKDLLALMTCGHRNIMQFFGVCVDDNYGLCVLTKLVEGGSVHDLMLKNKKLSSKDVVRIAVDVAEGMKFMNDHGVAYRDLNTQKIVLDKHGNAFLGDMGIVTACESVGEAMEYETDGYRWLAPEIIASDPESVTETWMSNAYSFGMIIWEMVTGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMIKCWNNTPSKRPNFSEILAILLRQNNYNRSMQPILTLNWAHRNLRLSATIITLK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4775g00001 600 MobiDBLite consensus disorder prediction 19 39 - -
Vium4775g00001 600 Pfam Protein tyrosine and serine/threonine kinase 351 566 IPR001245 GO:0004672|GO:0006468
Vium4775g00001 600 MobiDBLite consensus disorder prediction 1 39 - -
Vium4775g00001 600 ProSiteProfiles Protein kinase domain profile. 317 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4775g00001 600 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 83 567 - -
Vium4775g00001 600 SUPERFAMILY Protein kinase-like (PK-like) 308 586 IPR011009 -
Vium4775g00001 600 Gene3D Transferase(Phosphotransferase) domain 1 310 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4775g00001 Vium-Chr4775 5054 9398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4775g00001 300 567 MAP Kinase Kinase Kinase AT2G17700 31.136 1.40e-48 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Vium4775g00001 PK_Tyr_Ser-Thr 2.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4775g00001 - - gmx:100811417 945.651