Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4771g00005 ATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCCCAAGACTCTCCCTTCGCTCCAACTCCAGTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACTTGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCTTCCAACAATCGCCGCCAATAAGTACACATGGGAGAAGCCTCGTGCCGGTGGCACTTTGGAGTCCATAGTGAACCAAGCCACGAGCTTACCGCACCGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTGGTGCCGTGGTTAGACCCTCACGCCGCGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAACGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGAGAACTTGGTGTGGCTTTCACTTCCACCTCTATCAACTCTCTCGATAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGTTTTATGGTGAATTTGTAAAGGATGAAAACGGGGAGGACGAGAAGAAAAAGAGAGGAAATGGAAAATCTTCGGTGTCTACTAAAAGGAGCAGAGCAGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAGTATTTGAAGCAGTTGCAAGCACAGGTGCAAATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGATGGAAATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCCGCCTTCATGCCGATGGCGGCGTCGTGGGATGCCGCTGCCGCTGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACACTTTTTGGATGCCAATCACAGCCGATGAACATGGATGCCTACAGTAGACTTGCTGCGATGTATCAGCAGCTGCACCAGCCTCCAGTTTCTGGTTCCAAGAACTGA 1374 0.5393 MSQCVPSWDVDDNPPPPRLSLRSNSSSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKLPTIAANKYTWEKPRAGGTLESIVNQATSLPHRGKPTLNGDGGVYGNFLVPWLDPHAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDRELGVAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVFYGEFVKDENGEDEKKKRGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMEMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPMNMDAYSRLAAMYQQLHQPPVSGSKN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4771g00005 457 MobiDBLite consensus disorder prediction 245 284 - -
Vium4771g00005 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Vium4771g00005 457 CDD bHLH_AtPIF_like 271 332 IPR047265 -
Vium4771g00005 457 Gene3D - 266 332 IPR036638 GO:0046983
Vium4771g00005 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 333 IPR036638 GO:0046983
Vium4771g00005 457 Coils Coil 277 297 - -
Vium4771g00005 457 Pfam Helix-loop-helix DNA-binding domain 276 321 IPR011598 GO:0046983
Vium4771g00005 457 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 451 IPR031066 -
Vium4771g00005 457 SMART finulus 277 326 IPR011598 GO:0046983
Vium4771g00005 457 MobiDBLite consensus disorder prediction 245 261 - -
Vium4771g00005 457 FunFam transcription factor UNE10 isoform X1 266 331 - -
Vium4771g00005 457 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4771g00005 Vium-Chr4771 69405 74558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4771g00005 1 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.336 2.57e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4771g00005 HLH 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4771g00005 - - vra:106780284 784.252