Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4771g00004 ATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCCCAAGACTCTCCCTTCGCTCCAACTCCAGTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACTTGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCTTCCAACAATCGCCGCCAATAAGTACACATGGGAGAAGCCTCGTGCCGGTGGCACTTTGGAGTCCATAGTGAACCAAGCCACGAGCTTACCGCACCGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTGGTGCCGTGGTTAGACCCTCACGCCGCGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAACGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGAGAACTTGGTGTGGCTTTCACTTCCACCTCTATCAACTCTCTCGATAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGATGAAAACGGGGAGGACGAGAAGAAAAAGAGAGGAAATGGAAAATCTTCGGTGTCTACTAAAAGGAGCAGAGCAGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAGTATTTGAAGCAGTTGCAAGCACAGGTGCAAATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGATGGAAATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCCGCCTTCATGCCGATGGCGGCGTCGTGGGATGCCGCTGCCGCTGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACACTTTTTGGATGCCAATCACAGCCGATGAACATGGATGCCTACAGTAGACTTGCTGCGATGTATCAGCAGCTGCACCAGCCTCCAGTTTCTGGTTCCAAGAACTGA 1353 0.544 MSQCVPSWDVDDNPPPPRLSLRSNSSSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKLPTIAANKYTWEKPRAGGTLESIVNQATSLPHRGKPTLNGDGGVYGNFLVPWLDPHAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDRELGVAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVDENGEDEKKKRGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMEMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPMNMDAYSRLAAMYQQLHQPPVSGSKN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4771g00004 450 Coils Coil 270 290 - -
Vium4771g00004 450 MobiDBLite consensus disorder prediction 171 188 - -
Vium4771g00004 450 Gene3D - 259 325 IPR036638 GO:0046983
Vium4771g00004 450 MobiDBLite consensus disorder prediction 223 282 - -
Vium4771g00004 450 MobiDBLite consensus disorder prediction 224 254 - -
Vium4771g00004 450 MobiDBLite consensus disorder prediction 267 282 - -
Vium4771g00004 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Vium4771g00004 450 FunFam transcription factor UNE10 isoform X1 259 324 - -
Vium4771g00004 450 SMART finulus 270 319 IPR011598 GO:0046983
Vium4771g00004 450 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 444 IPR031066 -
Vium4771g00004 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 326 IPR036638 GO:0046983
Vium4771g00004 450 Pfam Helix-loop-helix DNA-binding domain 269 314 IPR011598 GO:0046983
Vium4771g00004 450 CDD bHLH_AtPIF_like 264 325 IPR047265 -
Vium4771g00004 450 MobiDBLite consensus disorder prediction 167 188 - -
Vium4771g00004 450 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4771g00004 Vium-Chr4771 69405 74558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4771g00004 1 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.136 2.83e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4771g00004 HLH 6.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4771g00004 - - vra:106780284 764.992