Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4766g00001 ATGCATCACACAATCTTTCTATTTAGAAAACCACCTCCTTTCCTATATAAATACCAACGATTGAACTCAATTTCCATCTCACACTCAGCTCTTCCAAACTACGCAACTCTTACTCTAACATATCAAGTCCCAATGGCAAATAAATTACGTAATTCTCTCCCAAAAACATCACCATTTCTCAACCTTTTTATACCCTTGTTATTCATCTCCCTGGTTTTCGCAGAAACCCCACCAACCACTTCTGTATCTCCCGTAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAGTTCCGTCCTCCCTCCCCGAAACGCCAATGTTTACGACTATGGCCGTTTCTCAGTGAAAGAGTCTCTTTCACAAGCAACCAAGTTCTTGAACTTGGTTAACAGATACCTTCAACGCCGCTCTTCTCTTTCAACCTCCGCAATCCACGCGCTCCAAGATTGCCAAACCCTCGCCGAACTCAACGTCGACTTTCTCTCCAGTTCCTTCCAAACATTTAACCGCACAACCACGCTCCTTCCCACTTCGCGAGCTGACGACATCCAAACCCTTCTAAGCGCCATTCTAACCAACCAACAAACCTGCTTGGAAGGCCTCCAAGCCACAGCCTCCGCTTGGCGTGTCAGCAGCGGACTCTTCCTACCGCTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACCAAGGGCTGGGTCCCCACCAACGCTAACGTCACCGCGTTTCAACCACCCGCCAAACACCGCGCCTTTCGAAACGGTCGTTTACCGCTCAAGATGTCCAGCAGAACACGCGCGATCTACAACTCCGTGAGTCGGAGAAAGCTCCTTCAGGGGAATGTGGGTGACGAGGTGAAAGTGAAGGACATCGTCACTGTCAGCAAAGATGGTAGCGGGAACTTCACCACCTTGAACGACGCCATTGCGGCGGCGCCCAACAAGTCTTCCTCTACATCGGGGTACTTCCTCATCTACGTCACTGCTGGTGTTTATGAGGAAAATGTGTCCATTGATAAGAAAAAGACGTACCTGATGATGGTTGGAGATGGCATCAACAAGACAATTATTACAGGAAATCGAAGTGTTGTTGATGGCTGGACAACTTTCAAGTCCGCAACTTTTGCGGTGGTTGGAGCAGGATTTGTGGGTGTTAACATGACCATTCGCAACACTGCTGGAGCAGAGAAGCACCAAGCCGTAGCACTTCGTAACGGGGCAGATTTATCGACGTTTTACAGTTGCAGTTTCGAGGGGTACCAAGACACACTCTATGCGCATTCCCTGAGACAATTCTACAGGGAATGCGACATCTACGGCACCGTGGATTTCATATTCGGAAACGCGGCGACAGTTTTGCAAAACTGTAACCTTTATCCTCGTCTCCCAATGAATGGCCAATTCAACGCCATAACCGCACAAGGCCGAACCGATCCCAACCAAAACACCGGAATTTGTATCCAAAATTGTACGATTAGAGCAGCCGATGATTTGGCTGCGAACATAAACGCGGCTGAAACTTATCTGGGAAGGCCTTGGAAAAATTACTCAAGAACGGTTTACATGCAGAGTTTTATGGACAGCGTGATCGATCCAGGTGGGTGGCGTGCATGGGACGGTGATTTTGCTTTGAACACTTTGTATTATGCAGAGTTTAACAACACTGGGCCTGGATCGACCACTGCAAACAGAGTCACATGGGCCGGTTACCACGTGATTAATGCCACCGATGCTGCTAATTTTACTGTCTCTAACTTCTTGCTCGGAGATAACTGGCTGCCCCAGACCACAGTGCCTTACGCAAGTAACTTCGTATAG 1830 0.4858 MHHTIFLFRKPPPFLYKYQRLNSISISHSALPNYATLTLTYQVPMANKLRNSLPKTSPFLNLFIPLLFISLVFAETPPTTSVSPVTICKSTPDPSYCSSVLPPRNANVYDYGRFSVKESLSQATKFLNLVNRYLQRRSSLSTSAIHALQDCQTLAELNVDFLSSSFQTFNRTTTLLPTSRADDIQTLLSAILTNQQTCLEGLQATASAWRVSSGLFLPLSNDTKLYTVSLALFTKGWVPTNANVTAFQPPAKHRAFRNGRLPLKMSSRTRAIYNSVSRRKLLQGNVGDEVKVKDIVTVSKDGSGNFTTLNDAIAAAPNKSSSTSGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGAGFVGVNMTIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAATVLQNCNLYPRLPMNGQFNAITAQGRTDPNQNTGICIQNCTIRAADDLAANINAAETYLGRPWKNYSRTVYMQSFMDSVIDPGGWRAWDGDFALNTLYYAEFNNTGPGSTTANRVTWAGYHVINATDAANFTVSNFLLGDNWLPQTTVPYASNFV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4766g00001 609 Pfam Plant invertase/pectin methylesterase inhibitor 86 232 IPR006501 GO:0004857
Vium4766g00001 609 FunFam Pectinesterase 289 608 - -
Vium4766g00001 609 Pfam Pectinesterase 296 594 IPR000070 GO:0030599|GO:0042545
Vium4766g00001 609 SMART PMEI_2 79 232 IPR006501 GO:0004857
Vium4766g00001 609 ProSitePatterns Pectinesterase signature 2. 442 451 IPR033131 -
Vium4766g00001 609 NCBIfam pectinesterase inhibitor domain 62 206 IPR006501 GO:0004857
Vium4766g00001 609 PANTHER PECTINESTERASE 74 600 - -
Vium4766g00001 609 Gene3D Invertase/pectin methylesterase inhibitor family protein 85 235 IPR035513 -
Vium4766g00001 609 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 86 235 IPR035513 -
Vium4766g00001 609 FunFam Pectinesterase 85 235 - -
Vium4766g00001 609 CDD PMEI-like_3 86 237 - -
Vium4766g00001 609 SUPERFAMILY Pectin lyase-like 293 605 IPR011050 -
Vium4766g00001 609 Gene3D - 289 608 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4766g00001 Vium-Chr4766 9068 11951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4766g00001 60 609 Carbohydrate Esterase AT4G02330 62.390 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4766g00001 K01051 - gmx:100790729 954.125