Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4764g00004 ATGAAGTTCCAATTCCGTGCTGTTTCATTTGTTCTGCTAAGCTTCATAGTGTCTCTCTTTGGCCTGATTGTAGCTGACTTGAACTCCGACAGACAAGCTCTGCTTGAGTTCTTCTCAAATGTTCCACACGCCCCAAGATTAAATTGGAGTGAGTCCACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATTAGCATCCATCTTCCAGGGGCAGGTTTCCAGGGCTCCATTCCAGAGAATAGCCTGGGTAAACTAGATTCTCTTAAAATTCTGAGCCTTCATTCCAATGGCCTCAGAGGAAACCTTCCTTCTGACATTCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAACTTCTCAGGTCTAATCCCTTCTTCCCTCTCCCCTAAACTCATAGCATTAGACATTTCCTCTAATAATTTCTCGGGAAGTATCCCACGTATCTTTCAGAATCTCAGTAGACTAACCTGGTTGTATCTCCAAAACAATTCCCTCTCTGGGGCTATTCCTGACTTCAACTTTACAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAAGTCCATCAACAAGTATCCGTACTCTTCTTTTGCTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAACTGCTCTGCAGTCTCCACTCCATCTTCATTTTCTTCCTCCATTTCTCCTTCACCTGTTCATCAACCACTCTCTCCAGAAGCAGCTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTGACAATTGGGGGCTGTGCTTTCCTCTCTCTCCTAGTTTTGGTGATGTTTGTATGCTGTTTAAAGAAGAACAAAAGTCAAAGCAGTGGCATACTTACAGGAAAGGCACCGTGTTCTGGAAAGATTGAGGTTTCAAAGAGTTTCGGGAGTGGGGTGCAAGAGGTTGAAAAAAACAGGCTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGGGCTGTTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGTCGGCACCCTAATGTTTTGCCCCTTCGAGCCTTTTACTTCTCCAAAGATGAGAAACTTCTAGTATATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGTTGCATGGTACGTTTTATTTACNAGACAAAAGATTACTCTCGCAGAAGGAAAGTTCCGGTAGTGTTTCTCTTCAGCTACAGCTCGTCATAGCTTTTATGCGTATTTCCTTCCCATCAATTTCCAATGTCTATCACTTGCCTCCACTCCACACCAAACAAGAAGCAATGAAGTTCCAATTCCGTGCTGTTTCATTTGTTCTGCTAAGCTTCATAGTGTCTCTCTTTGGCCTGATTGTAGCTGACTTGAACTCCGACAGACAAGCTCTGCTTGAGTTCTTCTCAAATGTTCCACACGCCCCAAGATTAAATTGGAGTGAGTCCACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATTAGCATCCATCTTCCAGGGGCAGGTTTCCAGGGCTCCATTCCAGAGAATAGCCTGGGTAAACTAGATTCTCTTAAAATTCTGAGCCTTCATTCCAATGGCCTCAGAGGAAACCTTCCTTCTGACATTCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAACTTCTCAGGTCTAATCCCTTCTTCCCTCTCCCCTAAACTCATAGCATTAGACATTTCCTCTAATAATTTCTCGGGAAGTATCCCACGTATCTTTCAGAATCTCAGTAGACTAACCTGGTTGTATCTCCAAAACAATTCCCTCTCTGGGGCTATTCCTGACTTCAACTTTACAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAAGTCCATCAACAAGTATCCGTACTCTTCTTTTGCTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAACTGCTCTGCAGTCTCCACTCCATCTTCATTTTCTTCCTCCATTTCTCCTTCACCTGTTCATCAACCACTCTCTCCAGAAGCAGCTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTGACAATTGGGGGCTGTGCTTTCCTCTCTCTCCTAGTTTTGGTGATGTTTGTATGCTGTTTAAAGAAGAACAAAAGTCAAAGCAGTGGCATACTTACAGGAAAGGCACCGTGTTCTGGAAAGATTGAGGTTTCAAAGAGTTTCGGGAGTGGGGTGCAAGAGGTTGAAAAAAACAGGCTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGGGCTGTTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGTCGGCACCCTAATGTTTTGCCCCTTCGAGCCTTTTACTTCTCCAAAGATGAGAAACTTCTAGTATATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGTTGCATGGGAACAGAGGAATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGTTGCAAAGGGGATTGCTTCCATTCACACTGAGCACATGGATTTAAAACTTACTCATGGCAACATCAAGTCCTCCAATGTGCTCATAACCCAAGAACATGATGGCTGCATCACTGATGTAGGACTCACTCCTATGATGACCACTCAATCAACCATGTCAAAAGCCAATGGCTACCGTGCTCCCGAAATAACCGAGTACAGGAGAATCACTCAGAAGTCTGATGTTTACAGCTTTGGAGTGCTCCTTCTTGAAATGCTCACTGGAAAGGCTCCAATAGGATATCCTGGATATGACGACATGGTTGATCTTCCAAGATGGGTGAGGTCTGTGGTTAGAGAGGAATGGACTGCTGAAGTTTTTGATGAGGAGCTGCTTAGAGGGCAGTATTTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCTAAGGTGGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAATAACCATAACACATCATCTGAGTCTGACTCTAATCTACAAACTCCATGA 3411 0.4327 MKFQFRAVSFVLLSFIVSLFGLIVADLNSDRQALLEFFSNVPHAPRLNWSESTPICTSWAGVTCNQNETSVISIHLPGAGFQGSIPENSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSLSPKLIALDISSNNFSGSIPRIFQNLSRLTWLYLQNNSLSGAIPDFNFTSLKYLNLSYNNLNGSIPKSINKYPYSSFAGNSHLCGPPLNNCSAVSTPSSFSSSISPSPVHQPLSPEAAPQNRSATTSKSYFGLASILALTIGGCAFLSLLVLVMFVCCLKKNKSQSSGILTGKAPCSGKIEVSKSFGSGVQEVEKNRLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAVLEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVLPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGTFYLXDKRLLSQKESSGSVSLQLQLVIAFMRISFPSISNVYHLPPLHTKQEAMKFQFRAVSFVLLSFIVSLFGLIVADLNSDRQALLEFFSNVPHAPRLNWSESTPICTSWAGVTCNQNETSVISIHLPGAGFQGSIPENSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSLSPKLIALDISSNNFSGSIPRIFQNLSRLTWLYLQNNSLSGAIPDFNFTSLKYLNLSYNNLNGSIPKSINKYPYSSFAGNSHLCGPPLNNCSAVSTPSSFSSSISPSPVHQPLSPEAAPQNRSATTSKSYFGLASILALTIGGCAFLSLLVLVMFVCCLKKNKSQSSGILTGKAPCSGKIEVSKSFGSGVQEVEKNRLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAVLEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVLPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGNRGMGRAPLDWDSRMKIALGVAKGIASIHTEHMDLKLTHGNIKSSNVLITQEHDGCITDVGLTPMMTTQSTMSKANGYRAPEITEYRRITQKSDVYSFGVLLLEMLTGKAPIGYPGYDDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVADNRPTMDETVRNIEEIRLPELNNHNTSSESDSNLQTP 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4764g00004 1136 ProSitePatterns Protein kinases ATP-binding region signature. 358 389 IPR017441 GO:0005524
Vium4764g00004 1136 FunFam pollen receptor-like kinase 1 320 427 - -
Vium4764g00004 1136 SUPERFAMILY L domain-like 40 225 - -
Vium4764g00004 1136 Gene3D Ribonuclease Inhibitor 631 721 IPR032675 -
Vium4764g00004 1136 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Vium4764g00004 1136 Gene3D Transferase(Phosphotransferase) domain 1 919 1134 - -
Vium4764g00004 1136 SUPERFAMILY L domain-like 531 716 - -
Vium4764g00004 1136 MobiDBLite consensus disorder prediction 730 749 - -
Vium4764g00004 1136 Gene3D Ribonuclease Inhibitor 520 630 IPR032675 -
Vium4764g00004 1136 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Vium4764g00004 1136 Gene3D Phosphorylase Kinase; domain 1 809 918 - -
Vium4764g00004 1136 Gene3D Phosphorylase Kinase; domain 1 318 427 - -
Vium4764g00004 1136 Pfam Protein kinase domain 356 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4764g00004 1136 Pfam Protein kinase domain 847 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4764g00004 1136 FunFam pollen receptor-like kinase 1 811 918 - -
Vium4764g00004 1136 FunFam Leucine-rich repeat receptor-like kinase 30 141 - -
Vium4764g00004 1136 Pfam Leucine rich repeat N-terminal domain 519 556 IPR013210 -
Vium4764g00004 1136 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vium4764g00004 1136 FunFam Leucine-rich repeat receptor-like protein kinase 633 719 - -
Vium4764g00004 1136 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Vium4764g00004 1136 Pfam Leucine rich repeat 609 667 IPR001611 GO:0005515
Vium4764g00004 1136 ProSiteProfiles Protein kinase domain profile. 352 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4764g00004 1136 FunFam Leucine-rich repeat receptor-like protein kinase 142 228 - -
Vium4764g00004 1136 PANTHER OS05G0588300 PROTEIN 501 1123 - -
Vium4764g00004 1136 FunFam Leucine-rich repeat receptor-like kinase 521 632 - -
Vium4764g00004 1136 ProSitePatterns Protein kinases ATP-binding region signature. 849 880 IPR017441 GO:0005524
Vium4764g00004 1136 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 919 1126 - -
Vium4764g00004 1136 SUPERFAMILY Protein kinase-like (PK-like) 847 1111 IPR011009 -
Vium4764g00004 1136 ProSiteProfiles Protein kinase domain profile. 843 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4764g00004 1136 SUPERFAMILY Protein kinase-like (PK-like) 356 442 IPR011009 -
Vium4764g00004 1136 MobiDBLite consensus disorder prediction 239 258 - -
Vium4764g00004 1136 Pfam Leucine Rich Repeat 678 697 IPR001611 GO:0005515
Vium4764g00004 1136 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4764g00004 Vium-Chr4764 20180 29340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4764g00004 5 439 Receptor kinase-like Gene Family AT5G58300 53.440 1.88e-141 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium4764g00004 Pkinase 2.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4764g00004 - - vum:124839146 2187.53