Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4764g00001 | ATGGTTTCTTCCCAGTTCTCTGTCTTAAATGAAAATAGTTCGCCAAAGTCTTTCCTGAACCAGTTGGTTCTACCAAAGGGACCACCTGATCTTTTGCCTTCTTCGAATTCTGAGGACTTTGAATTTTCTGATGTGTTTGGTCCATCTCCTGTTGAAGCCTCAATAACAGTAAGCTCCGAGAAACATGGAGATTCCACACCTACACGAGGTTCTGGTGGAAAGATTTGCAATGATCCTGATTGCATCAACATCCGCTCTCAATCTTTATTTGCTCCCACAACTTGTATTGGTCAGTCCTTGCAGCTGAGGAAGCTCAACTTACATGAGACAGAAGATGCATTGGACCTTGTGGAGGTCTTAACAGAAGCACAGAAAGAAATTGAACATTCTGTTAACAATGCAGCAGTAGAGAAAAATAATTTACATTTCAATGATTACTGTCTGAATAATCAGATTATTGGAGTTGAGGATTTTGAACTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGAAAGGTGTACCAGGTGAGGAGGGCAGGTACTTCTGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATCATAGAGAGAAACCATGCTGAATATGTAAAGTCTGAAAGGGATATACTAACAAAGGTGGACAACCCATTTGTTGTGCGGCTCAGATACGCTTTCCAAACCAAATATAGGCTGTACCTTGTGCTTGATTTTGTCAATGGTGGCCACCTTTTCTTTCAGCTCTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCCGCAGAGATTATTTGTGCCGTTTCTTATCTTCATGCAAATGATGTAATGCACAGGGATCTTAAGCCTGAAAACATTCTTCTCGATGCAGATGGTCATGCTGTGTTAACAGATTTTGGCCTGGCTAAGCAATTCAATGGCACTGAAAGATCAAATTCTATGTGTGGAACTGTAGAGTACATGGCCCCTGAAATTGTAATGGGAAAAGGTCATGATAAGGCTGCTGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGCTTACCGGAAAGCCTCCTTTCTGTGGCGGAAATAGACATAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCAGCATTTTTGTCAAATGAGGCACATTCACTGTTAAAAGGGCTGTTGCAAAAGGATGTCAGCAAACGCCTTGGCAGTGGATCAAGAAGCAGTGAGGGGATTAAAAGCCACAAGTGGTTTAAGTCTGTGAACTGGAATAAATTGGAAGCCCGTGAAGTCAGGCCAAGCTTTGTGCCAGATGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGCGGTGGACTAGTATGTCTTTGCTGGATTCTCCAGCTTCTACTCCCAAAAAGGATGACACTACCTTCAAGAAATTCTCATTTACTGGTGCTCCAGTTCAGTAA | 1440 | 0.4215 | MVSSQFSVLNENSSPKSFLNQLVLPKGPPDLLPSSNSEDFEFSDVFGPSPVEASITVSSEKHGDSTPTRGSGGKICNDPDCINIRSQSLFAPTTCIGQSLQLRKLNLHETEDALDLVEVLTEAQKEIEHSVNNAAVEKNNLHFNDYCLNNQIIGVEDFELLKVVGQGAFGKVYQVRRAGTSEIYAMKVMRKDKIIERNHAEYVKSERDILTKVDNPFVVRLRYAFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSYLHANDVMHRDLKPENILLDADGHAVLTDFGLAKQFNGTERSNSMCGTVEYMAPEIVMGKGHDKAADWWSVGILLYEMLTGKPPFCGGNRHKIQQKIIKDKIKLPAFLSNEAHSLLKGLLQKDVSKRLGSGSRSSEGIKSHKWFKSVNWNKLEAREVRPSFVPDVAGKHCVANFEERWTSMSLLDSPASTPKKDDTTFKKFSFTGAPVQ | 479 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4764g00001 | 479 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vium4764g00001 | 479 | ProSitePatterns | Protein kinases ATP-binding region signature. | 164 | 187 | IPR017441 | GO:0005524 | |
Vium4764g00001 | 479 | Gene3D | Phosphorylase Kinase; domain 1 | 156 | 455 | - | - | |
Vium4764g00001 | 479 | Pfam | Protein kinase domain | 158 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4764g00001 | 479 | ProSiteProfiles | Protein kinase domain profile. | 158 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4764g00001 | 479 | SUPERFAMILY | Protein kinase-like (PK-like) | 155 | 461 | IPR011009 | - | |
Vium4764g00001 | 479 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672|GO:0006468 | |
Vium4764g00001 | 479 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 128 | 477 | - | - | |
Vium4764g00001 | 479 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 433 | - | - | |
Vium4764g00001 | 479 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Vium4764g00001 | 479 | CDD | STKc_AGC | 164 | 414 | IPR045270 | GO:0004674|GO:0005524 | |
Vium4764g00001 | 479 | FunFam | Non-specific serine/threonine protein kinase | 155 | 259 | - | - | |
Vium4764g00001 | 479 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 415 | 479 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vium4764g00001 | 479 | SMART | serkin_6 | 158 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4764g00001 | 479 | SMART | pkinase_C_6 | 415 | 475 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vium4764g00001 | 479 | FunFam | Non-specific serine/threonine protein kinase | 238 | 433 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4764g00001 | Vium-Chr4764 | 11108 | 15037 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4764g00001 | 1 | 477 | AGC Kinase Gene Family | AT3G08720 | 61.411 | 0.0 | 584 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | AGC-Pl | Vium4764g00001 | Pkinase | 5.5e-74 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4764g00001 | K04688 | - | gmx:100803509 | 787.334 |