Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4763g00005 ATGGCACTTTGTATGCAGAGAGATTCAGTATTGAACAGGCTCATGGATTGTGGCAAGTATGTGAGGTACACTCCCGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCGGAGTGTCCCAAGCCTAGCTCTTCCAGAAGGCAACAACTCATTAGGGACTGCCCTATCCTTTCCAACATTGAACAAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAAAAGCAGAGGAAGGAGGCCTCTCGTCTTCAGACAGTGAATAGAAAGCTGTCGGCGATGAACAAGTTGTTAATGGAAGAAAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATACATGAAACAACAAATACACACTGCGTCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAGAAGCAACAGCAAAACCCAAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTTTTGCAATTGCTCAAGAGACCCTGGCAGCATTTCTTTCAAAAGCTACTGGAACTGCTGTCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCGGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTAAGCGTAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCTACAACCTTGGCAGCTGCAAGAGACTTCTGGACTCTAAGATATACTTCAACATTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCTTTGACTTCTTCAACGGGTGGCCCAACAGGGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAGTGCTTCCTAGTGGCTATCTAATTAGACCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATCTGGATGTAAGGACAATGATGCGGTTGAAATCAGTTTTGAATTTTTCATATCTTTGA 1080 0.4639 MALCMQRDSVLNRLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRDCPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASATTTDNSCESVVVSGQKQQQNPKTQHPQWDANNPAGLFAIAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTSTLEDGSLVICERSLTSSTGGPTGPPASNFVRAEVLPSGYLIRPCEGGGSIIHIVDHIDLDVRTMMRLKSVLNFSYL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4763g00005 359 FunFam Homeobox-leucine zipper protein REVOLUTA 19 74 - -
Vium4763g00005 359 CDD homeodomain 19 79 IPR001356 GO:0003677
Vium4763g00005 359 ProSiteProfiles 'Homeobox' domain profile. 22 78 IPR001356 GO:0003677
Vium4763g00005 359 Pfam START domain 167 347 IPR002913 GO:0008289
Vium4763g00005 359 CDD bZIP 71 110 - -
Vium4763g00005 359 Gene3D - 15 85 - -
Vium4763g00005 359 SMART START_1 166 359 IPR002913 GO:0008289
Vium4763g00005 359 Gene3D - 201 357 IPR023393 -
Vium4763g00005 359 SUPERFAMILY Bet v1-like 167 344 - -
Vium4763g00005 359 Pfam Homeodomain 20 77 IPR001356 GO:0003677
Vium4763g00005 359 ProSiteProfiles START domain profile. 157 359 IPR002913 GO:0008289
Vium4763g00005 359 SMART HOX_1 16 82 IPR001356 GO:0003677
Vium4763g00005 359 Coils Coil 84 108 - -
Vium4763g00005 359 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Vium4763g00005 359 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 345 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4763g00005 Vium-Chr4763 35711 38961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4763g00005 7 347 Homeobox Transcription Factor Family AT1G30490 80.994 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4763g00005 START 5.6e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4763g00005 K09338 - vum:124839139 722.235