Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4763g00005 | ATGGCACTTTGTATGCAGAGAGATTCAGTATTGAACAGGCTCATGGATTGTGGCAAGTATGTGAGGTACACTCCCGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCGGAGTGTCCCAAGCCTAGCTCTTCCAGAAGGCAACAACTCATTAGGGACTGCCCTATCCTTTCCAACATTGAACAAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAAAAGCAGAGGAAGGAGGCCTCTCGTCTTCAGACAGTGAATAGAAAGCTGTCGGCGATGAACAAGTTGTTAATGGAAGAAAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATACATGAAACAACAAATACACACTGCGTCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAGAAGCAACAGCAAAACCCAAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTTTTGCAATTGCTCAAGAGACCCTGGCAGCATTTCTTTCAAAAGCTACTGGAACTGCTGTCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCGGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTAAGCGTAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCTACAACCTTGGCAGCTGCAAGAGACTTCTGGACTCTAAGATATACTTCAACATTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCTTTGACTTCTTCAACGGGTGGCCCAACAGGGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAGTGCTTCCTAGTGGCTATCTAATTAGACCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATCTGGATGTAAGGACAATGATGCGGTTGAAATCAGTTTTGAATTTTTCATATCTTTGA | 1080 | 0.4639 | MALCMQRDSVLNRLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRDCPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASATTTDNSCESVVVSGQKQQQNPKTQHPQWDANNPAGLFAIAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTSTLEDGSLVICERSLTSSTGGPTGPPASNFVRAEVLPSGYLIRPCEGGGSIIHIVDHIDLDVRTMMRLKSVLNFSYL | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4763g00005 | 359 | FunFam | Homeobox-leucine zipper protein REVOLUTA | 19 | 74 | - | - | |
| Vium4763g00005 | 359 | CDD | homeodomain | 19 | 79 | IPR001356 | GO:0003677 | |
| Vium4763g00005 | 359 | ProSiteProfiles | 'Homeobox' domain profile. | 22 | 78 | IPR001356 | GO:0003677 | |
| Vium4763g00005 | 359 | Pfam | START domain | 167 | 347 | IPR002913 | GO:0008289 | |
| Vium4763g00005 | 359 | CDD | bZIP | 71 | 110 | - | - | |
| Vium4763g00005 | 359 | Gene3D | - | 15 | 85 | - | - | |
| Vium4763g00005 | 359 | SMART | START_1 | 166 | 359 | IPR002913 | GO:0008289 | |
| Vium4763g00005 | 359 | Gene3D | - | 201 | 357 | IPR023393 | - | |
| Vium4763g00005 | 359 | SUPERFAMILY | Bet v1-like | 167 | 344 | - | - | |
| Vium4763g00005 | 359 | Pfam | Homeodomain | 20 | 77 | IPR001356 | GO:0003677 | |
| Vium4763g00005 | 359 | ProSiteProfiles | START domain profile. | 157 | 359 | IPR002913 | GO:0008289 | |
| Vium4763g00005 | 359 | SMART | HOX_1 | 16 | 82 | IPR001356 | GO:0003677 | |
| Vium4763g00005 | 359 | Coils | Coil | 84 | 108 | - | - | |
| Vium4763g00005 | 359 | SUPERFAMILY | Homeodomain-like | 19 | 81 | IPR009057 | - | |
| Vium4763g00005 | 359 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 | 15 | 345 | IPR044830 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4763g00005 | Vium-Chr4763 | 35711 | 38961 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4763g00005 | 7 | 347 | Homeobox Transcription Factor Family | AT1G30490 | 80.994 | 0.0 | 585 |
Transcription factors information