Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4763g00004 ATGGCACTTTGTATGCAGAGAGATTCAGTATTGAACAGGCTCATGGATTGTGGCAAGTATGTGAGGTACACTCCCGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCGGAGTGTCCCAAGCCTAGCTCTTCCAGAAGGCAACAACTCATTAGGGACTGCCCTATCCTTTCCAACATTGAACAAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAAAAGCAGAGGAAGGAGGCCTCTCGTCTTCAGACAGTGAATAGAAAGCTGTCGGCGATGAACAAGTTGTTAATGGAAGAAAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATACATGAAACAACAAATACACACTGCGTCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAGAAGCAACAGCAAAACCCAAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTTTTGCAATTGCTCAAGAGACCCTGGCAGCATTTCTTTCAAAAGCTACTGGAACTGCTGTCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCGGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTAAGCGTAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCTACAACCTTGGCAGCTGCAAGAGACTTCTGGACTCTAAGATATACTTCAACATTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCTTTGACTTCTTCAACGGGTGGCCCAACAGGGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAGTGCTTCCTAGTGGCTATCTAATTAGACCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATCTGGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCTTCAAAATTCTTAGCTCAGAAATTGACCACTGCTGCCTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGTCGTCAACCTGCTGTCTTGAGAACATTTAGTCAAAGGCTTTGCAAAGGGTTTAATGATGCTGTCAATGGGTTTGTGGATGATGGTTGGTCGCCAATTGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCCAACAAGTCTTTTGGTTCCCATTACAATACATCCATGCTTCCAACATTTGGAGGTGGGGTTCTTTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAACATCGTTCTGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTGGCTTCCCAAGCAGCCAGGTCATTTTGCCTCTTGCTCATACTATTGAGCATGAAGAGTTCTTGGAGGTAGTTCGAATTGAGGGTAATGCATTTCCCCCTGATGATGTAGCTTTGGCGTGTGATATGTATCTATTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGCGCACAGCTTGTGTTTGCACCTATCGATGAGTCTTTTGCAGATGATGCTCTGTTACTGCCTTCTGGTTTCCGCATCATACCATTGGATCCTAAAACTGATGGTCCAGCTTCAACTAGGACACTGGATTTGGCATCAGCACTAGACATAGGATCTGGTAATGCTCGTCCTGCTGGTGAAACTGATCTGAATAACTACAACCTTAGGTCAGTCCTCACAATTGCATTCCAGTTTACTTTTGAGAACCATTTGCGGGACAATGTGGCTGTCATGGCTCGCCAATATGTGCGCAATGTTGTAAGATCAGTTCAGAGGGTTGCCATGGCAATTGCACCCTCTCGGCTCAGTACAGAGTTAGGGCCAAAGTCACTTACTGGTCCACCAGAGGCTCTTACCTTGGCAAGATGGATCTACAGAAGCTACAGGCTTCACACCTGCACAGACCTTTTCAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAATATTATGCTGTTCTGTAAAAACTAATGCATCTCCAGTTTTCACCTTTGCCAACCAAGCTGGACTTGATATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAATCTGGCAGGAAGCTTCTCTGCATCGAGTTCTCCAAGATAATGCAACAGGGGTTTGCATATCTTCCAGCTGGAATATGTGTATCAAGTATGAATCGACCAGTGTCCTATGAGCAGGCCATTGCATGCAAAGTTTTGGATGATAATGATTCCAATCACTGCCTTGCCTTTGTGTTCGTGAACTGGTCTTTTGTCTAA 2541 0.4577 MALCMQRDSVLNRLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRDCPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASATTTDNSCESVVVSGQKQQQNPKTQHPQWDANNPAGLFAIAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTSTLEDGSLVICERSLTSSTGGPTGPPASNFVRAEVLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFVDDGWSPIGNDGVEDVTIAINSSPNKSFGSHYNTSMLPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPSGFPSSQVILPLAHTIEHEEFLEVVRIEGNAFPPDDVALACDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGPASTRTLDLASALDIGSGNARPAGETDLNNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTELGPKSLTGPPEALTLARWIYRSYRLHTCTDLFRVESTSGDAILKQLWHHSDAILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKLLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIACKVLDDNDSNHCLAFVFVNWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4763g00004 846 CDD homeodomain 19 79 IPR001356 GO:0003677
Vium4763g00004 846 Gene3D - 201 382 IPR023393 -
Vium4763g00004 846 Gene3D - 15 85 - -
Vium4763g00004 846 ProSiteProfiles 'Homeobox' domain profile. 22 78 IPR001356 GO:0003677
Vium4763g00004 846 SUPERFAMILY Bet v1-like 167 378 - -
Vium4763g00004 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 846 IPR044830 GO:0003700
Vium4763g00004 846 CDD bZIP 71 110 - -
Vium4763g00004 846 Pfam START domain 167 375 IPR002913 GO:0008289
Vium4763g00004 846 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Vium4763g00004 846 Pfam Homeodomain 20 77 IPR001356 GO:0003677
Vium4763g00004 846 SMART START_1 166 376 IPR002913 GO:0008289
Vium4763g00004 846 Pfam MEKHLA domain 701 845 IPR013978 -
Vium4763g00004 846 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Vium4763g00004 846 SMART HOX_1 16 82 IPR001356 GO:0003677
Vium4763g00004 846 Coils Coil 84 108 - -
Vium4763g00004 846 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4763g00004 Vium-Chr4763 27884 35394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4763g00004 1 846 Homeobox Transcription Factor Family AT2G34710 77.427 0.0 1352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4763g00004 START 4.4e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4763g00004 K09338 - gmx:100807637 1589.7